Query= MSMg01no054_n13.b1 MSMg01no054_n13.b1 CHROMAT_FILE:
MSMg01no054_n13.b1 PHD_FILE: MSMg01no054_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:07 2005
(511 letters)
>mm_chr4_86227570_86228477
Length = 908
Score = 911 bits (471), Expect = 0.0
Identities = 496/505 (98%), Gaps = 3/505 (0%)
Strand = Plus / Plus
Query: 7 gaattcacttctcaccctatgatatcagctgcagttcagtgacaagacttcagggtaagt 66
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacttc-caatgtatgatatcagctgcagttcagtgacaagacttcagggtaagt 265
Query: 67 gcatcacagctaaatcaacttgaaaatgcttcatcttgtcaaatcagagagtctcttgct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcatcacagctaaatcaacttgaaaatgcttcatcttgtcaaatcagagagtctcttgct 325
Query: 127 tcaaggctcttacttgagatttcttcttctgaaaaattgatttttaaaagaggaaaataa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaaggctcttacttgagatttcttcttctgaaaaattgatttttaaaagaggaaaataa 385
Query: 187 atattataagtaggaacaattccacaaagtagtaaagttcttgatttagcaaaggcttac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atattataagtaggaacaattccacaaagtagtaaagttcttgatttagcaaaggcttac 445
Query: 247 tttgtgcaagactaataaataatgaatgattttatcatttctactcaaatgccttttctc 306
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 446 tttgtgcaagactaacaaataatgaatgaaattatcatttctactcaaatgccttttctc 505
Query: 307 aaaataaataaaaatcaatatacttctaaaatacttttcataagtgttcatcatgaaaaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaataaataaaaatcaatatacttctaaaatacttttcataagtgttcatcatgaaaaa 565
Query: 367 accaaagtgatatgtgaaaaatctatataacaagacctaaatcagtcctaaatacctaag 426
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acca--gtgatatgtgaaaaatctatataacaagacctaaatcagtcctaaatacctaag 623
Query: 427 aataattttaatactttattatataattttcaaacataaaaataagagaactatgattaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aataattttaatactttattatataattttcaaacataaaaataagagaactatgattaa 683
Query: 487 taaaatgtgatgaatgcttggcttc 511
|||||||||||||||||||||||||
Sbjct: 684 taaaatgtgatgaatgcttggcttc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 908
Length adjustment: 10
Effective length of query: 501
Effective length of database: 898
Effective search space: 449898
Effective search space used: 449898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_n13.g1 MSMg01no054_n13.g1 CHROMAT_FILE:
MSMg01no054_n13.g1 PHD_FILE: MSMg01no054_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:07 2005
(367 letters)
>mm_chr4_86386067_86386833
Length = 767
Score = 663 bits (343), Expect = 0.0
Identities = 361/367 (98%)
Strand = Plus / Minus
Query: 1 attccctatagaactctttttaaagaagcaatccataatggaaaaggcatcctttcatca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 405 attccctatagaactctttttaaagaagcaatccataatggaaaaggcatgttttcatca 346
Query: 61 tttcatgaagccttcagttggatgcccaagggaatgtttagagagtacttcttctaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttcatgaagccttcagttggatgcccaagggaatgtttagagagtacttcttctaacaa 286
Query: 121 actgatttggaattggaggaagttggattcctaaggtgggggtctcactctctttcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 actgatttggaattggaggaagttggattcctaaggtgggggtctcactctctttcattt 226
Query: 181 gtctgtttaaaacagggtcccatattgtgatgcctactcctggttgtcaacttgactata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gtctgtttaaaacagggtcccatattgtgatgcctactcctggttgtcaacttgactata 166
Query: 241 cctgtattgaccttcaatccacaaatggagggaatacctgagacccagatcttgaggctg 300
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cctggaatgaccttcaatccacaaatggagggaatacctgagacccagatcttgaggctg 106
Query: 301 aaaaacacaagcttttgatatagactttgcggcggaaggacacacacttttgatgtgggt 360
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 105 aaaaacacaagcttttgatatagactttgcggtggaagaacacacacttttgatgtgggt 46
Query: 361 ctttaca 367
|||||||
Sbjct: 45 ctttaca 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
