BAC Information

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BAC

Clone NameMSMg01-055B14
Chromosome4 (Build37)
Map Location 50,064,439 - 50,064,703
singlet/doubletsinglet
Overlap geneLOC666663
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055B14.T7 (MSMg01no055_b14.b1)MSMg01-055B14.TJ (MSMg01no055_b14.g1)
ACCAG282860AG282861
length7081,023
length of high quality
(start - end)
269 (43 - 311)---
definitionCHROMAT_FILE: MSMg01no055_b14.b1 PHD_FILE: MSMg01no055_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:26 2005CHROMAT_FILE: MSMg01no055_b14.g1 PHD_FILE: MSMg01no055_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTGTACCTTAAGTTTTGTATTATATTAGTTAAAATAGTGAAAGGAC
AAGGATTGACTTTGGCTCAGGGTTTCAAAAAACTCAGCCCACTATAGCTT
TGAAACTGTGGTAGAGGAAAAGAGAACACTTTCCATAGTGTTAGAGATGG
TCAAGAGTAAGAATGGAAGGGTTGAGAAATAATATACTCCCAAGGACATG
CCCCTTTACTGACTTCTTCCAGACAGACTACACTGCCCCAAAATGTCTAG
AACCTCCCCAAATCTGTCTGGTAGGGACCAAGCACTCAAATCATGAGCAA
TGATTTTTTTGACCCCCAGGCGGCCCCCTGTGGATTCAAGCAACAACATA
TTCTCTCAGCTTTAATAAACAGACAAGAGAGAACAGATCGACCACGTGAT
GAGATCTTGGCATGGATTTAGGTACCAGAACAAGCCCAATATAGAGATTC
TGAATCTCTCTTGATGAGTTTCTAGACTTGTATTTCTAGCAGGTGATTTT
GAGTTGCCTGAATCTTGGGTCAACTATTTGATAACTCTTTATGATAACCT
CTAGTCACCTTTTATTAGCTATGCTGAAGCCAGGTATTCCAAGGTTTTTT
TGAATACCACCTCTACTGTGACTATAACCCTGGCCATGATGGTTAACCAG
CTAATCCG
GCGATCCCACGGGTGTGTGCGATTTATCACCCGCCCCTCTTCGTGTTTGG
CTATTTTATTGGAAGGCTGGTGGGCGGGGGTTTTTTCAACAGGACGCGTA
TCGACCGAGGGGCTCCCGAAATTTTTGGGAGCAGTCTGGGAGAGTAGGAC
GTTAACATTACGGGCGGAATTAAGCGCGGGATGGCGCTTCCCGGTCTCCC
CAGGGTTTTTCTCTGTTGTAACCACGTATATAGGTCCACTGTTCTCCGAT
TGCCGGACACGTGGTCCACTACTTTTCTCTGCGCGCTTCCATCGTACAGT
TACGGCGCGTTTTTTTCCCGCTTTAATTCGCCGCATTTGACCCGAAACGA
TATAATTTACCATGGGTGCCGCGAATTTGTTCGCGCGCGACCAATGCGCG
ATGGGAGACTTCTTTGGTGTCCGAGTATGCGGATTCCGTGTGGATACATG
GAACGGCCTTTAAATTCTAGATTACCCCATAACGAATCGCAAGATTTATA
GACTCCTATTACCGCCGCGTTGTGTGTGTTTGGCAAACCACATAGTATAA
CGCCGTCGTTGTAGTAGGCATGCCGCTCCCGCCCACGGTTTATCCCCGCT
TATATTTATACATTGCTGCGCTCAGTTCAATTCCCCCCTGTCGCGCGCGT
TATTTTGCGGTTCCGACTCAGTTTCGTGTGCTCTGGTCTATGGCCGACCA
CTACGCTACCTCGCTTTTTATCTTGCCCGCTGGCTAATTCTTGTTCGCCT
GCGCGCTCGTCTTCCGCCGGTTATTTGTCCGCGTTTCGCGACGGCTATAC
CATTAAAATTCCGGCGCCGTTTTCTTTTTGGTTCCGCCACCGCGCCCGCG
GGTACTATGAATATTTTTCGTCACTTTGGCGACGCGATTCCGGGCGGCTA
TTCCCGGAGTTCGGTAATTACCGCGCGGGACTAAAATAGCGCCGCGCGCG
GCTAATATAATCGGAGTGAGCACCGTAATAGTAGGAACGCATGGGCCGCT
TTAACATTCATCATCCCGCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_b14.b1 MSMg01no055_b14.b1 CHROMAT_FILE:
MSMg01no055_b14.b1 PHD_FILE: MSMg01no055_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:26 2005
         (269 letters)



>mm_chr4_50064235_50064903
          Length = 669

 Score =  497 bits (257), Expect = e-145
 Identities = 263/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgtaccttaagttttgtattatattagttaaaatagtgaaaggacaaggat 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttggactttaagttttgtattatattagttaaaatagtgaaaggacaaggat 264

                                                                       
Query: 65  tgactttggctcagggtttcaaaaaactcagcccactatagctttgaaactgtggtagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgactttggctcagggtttcaaaaaactcagcccactatagctttgaaactgtggtagag 324

                                                                       
Query: 125 gaaaagagaacactttccatagtgttagagatggtcaagagtaagaatggaagggttgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaagagaacactttccatagtgttagagatggtcaagagtaagaatggaagggttgag 384

                                                                       
Query: 185 aaataatatactcccaaggacatgcccctttactgacttcttccagacagactacactgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaataatatactcccaaggacatgcccctttactgacttcttccagacagactacactgc 444

                                    
Query: 245 cccaaaatgtctagaacctccccaa 269
           |||||||||||||||||||||||||
Sbjct: 445 cccaaaatgtctagaacctccccaa 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)