BAC Information

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BAC

Clone NameMSMg01-055F14
Chromosome4 (Build37)
Map Location 25,184,158 - 25,184,456
singlet/doubletsinglet
Overlap gene1810074P20Rik
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5
Downstream genePrdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055F14.T7 (MSMg01no055_f14.b1)MSMg01-055F14.TJ (MSMg01no055_f14.g1)
ACCAG283044AG283045
length708742
length of high quality
(start - end)
244 (67 - 310)299 (78 - 376)
definitionCHROMAT_FILE: MSMg01no055_f14.b1 PHD_FILE: MSMg01no055_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:44 2005CHROMAT_FILE: MSMg01no055_f14.g1 PHD_FILE: MSMg01no055_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATTTTCACAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCC
TGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAAT
GTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGA
TATTCATAATATTTTATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTT
CTGTGTTTTATGCCCCCCCACCCCAGTGGCTTCATAAAATGAGTTGGGTA
GAGTACTTTCTACTTCTATCATGTGAAAAAGTTTGTGCAGAACTGGAATT
AGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCC
TGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAG
GGGATATGGGACTGTTTACAAGGTCAACTTGATCCTGATTCCACTTTGGT
ACCTGGTATCTGACCAGAAATTTGTCCATTTCGTCCAGGCTTTCCTGATT
TGTTGAAAAAAGTCTTTTGTAAAAAGCTCTGAAGGTGTTTAGGACCTCCT
CCAGAACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGATGTAGTAGGGACAAGGA
TAAAGAGGAATTTTTAAAAACTTATTCTCTAATACCTGTAATCTTAGAGA
AATGAGGCATGTGACATTGTTTTGTGCATAGATTATTGAGGCACTATAAC
AGCAGTAAACCATTCTACCTTAAAGTAATTTCAGTGCTTTGAAAAGGGTT
ATGTTGTAATCTCTGAAATGGAGGGTGAAATTAGGTTCTCAGCTAAAATA
CAGAATCAAGTCAGTATGACAGATTACTGGAGGAAATGTAATTTAACAAC
CTGTAAAAGGCTTATGGGAAGCAAACCGCGAAAAGACAATTTTGCGTGAG
CATCAGGGTTGGAGAACAGATCTCAGAAGAGAATAGAACTTTGGGTGTCT
ACCTTAAAGCTATGGCTTCAACTGTTTAGATCCTCATTAAGATTAAAAAT
CAATTTTTGAGCCATTTTATTTTATTGCTAAGTTTTCACCTGCAGAATCA
ATAATCTGATTTAGCTAAAAGTAATCAGTTGTATAAAAGGCATAGCTTTA
TCATTTATAATGGAAATATTGTTTGCTTTCTTTGCTACCAATACTTTTCA
AGTGTCTGGTTAGGCATGCCATTTCCACAATTGANAACATTTCCATTACA
GTAGCTGCATGCTAATTTTATTGTTCATCAGTATAGAATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_f14.g1 MSMg01no055_f14.g1 CHROMAT_FILE:
MSMg01no055_f14.g1 PHD_FILE: MSMg01no055_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:44 2005
         (299 letters)



>mm_chr4_25183958_25184656
          Length = 699

 Score =  578 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagatgtagtagggacaaggataaagaggaatttttaaaaacttattctctaatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaagatgtagtagggacaaggataaagaggaatttttaaaaacttattctctaatacct 440

                                                                       
Query: 61  gtaatcttagagaaatgaggcatgtgacattgttttgtgcatagattattgaggcactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtaatcttagagaaatgaggcatgtgacattgttttgtgcatagattattgaggcactat 380

                                                                       
Query: 121 aacagcagtaaaccattctaccttaaagtaatttcagtgctttgaaaagggttatgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aacagcagtaaaccattctaccttaaagtaatttcagtgctttgaaaagggttatgttgt 320

                                                                       
Query: 181 aatctctgaaatggagggtgaaattaggttctcagctaaaatacagaatcaagtcagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatctctgaaatggagggtgaaattaggttctcagctaaaatacagaatcaagtcagtat 260

                                                                      
Query: 241 gacagattactggaggaaatgtaatttaacaacctgtaaaaggcttatgggaagcaaac 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gacagattactggaggaaatgtaatttaacaacctgtaaaaggcttatgggaagcaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)