Query= MSMg01no055_k02.b1 MSMg01no055_k02.b1 CHROMAT_FILE:
MSMg01no055_k02.b1 PHD_FILE: MSMg01no055_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:04 2005
(516 letters)
>mm_chr4_126808214_126809124
Length = 911
Score = 930 bits (481), Expect = 0.0
Identities = 503/513 (98%), Gaps = 5/513 (0%)
Strand = Plus / Plus
Query: 4 ggaattcccagcatatactgagactgactaaaccctgcccctgctcatcaccaagaaggg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagcatagactgagactgactaaaccctgcccctgctcatcaccaagaaggg 263
Query: 64 aggggtaatggtgcgcgctttgtcctggtttatttacagaacactgaaaataaaagtaaa 123
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 aggggtaatggtgtgtgctttgtcctggtttatttacagaacactgaaaat-----taaa 318
Query: 124 cagcttggtacataagtgcccattaaatgctattattgaatctttgtttgtcctaccaat 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 cagcttggtacataagtgcccattaaatgctattattgaatctctgtttgtcctaccaat 378
Query: 184 gagaatacggactgtgcttgtcagaactagaacttctaaggcctgattggttccagaaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagaatacggactgtgcttgtcagaactagaacttctaaggcctgattggttccagaaac 438
Query: 244 catgttttctcagtgtttcagcagccaagatgaaaatgtacaggcatgaccagggctgcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catgttttctcagtgtttcagcagccaagatgaaaatgtacaggcatgaccagggctgcc 498
Query: 304 ctacaacgtaatcaactccctactttccagaaatggcaggatgcaggaacactttaaagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctacaacgtaatcaactccctactttccagaaatggcaggatgcaggaacactttaaagc 558
Query: 364 ctatcacagtagagcccggagcccctggggtcccagactctcctccagcatgacacaccc 423
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 559 ctatcacagtagagcccggagcccctggggtcccagcctctcctccagcatgacacaccc 618
Query: 424 aacctgcctccagtcagtatgttgtaaaagctcttgcactggcactgagggaatcctgtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aacctgcctccagtcagtatgttgtaaaagctcttgcactggcactgagggaatcctgtt 678
Query: 484 taccaaggttgatatggactcaaaagcatggtg 516
|||||||||||||||||||||||||||||||||
Sbjct: 679 taccaaggttgatatggactcaaaagcatggtg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 911
Length adjustment: 10
Effective length of query: 506
Effective length of database: 901
Effective search space: 455906
Effective search space used: 455906
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_k02.g1 MSMg01no055_k02.g1 CHROMAT_FILE:
MSMg01no055_k02.g1 PHD_FILE: MSMg01no055_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:04 2005
(317 letters)
>mm_chr4_126892070_126892786
Length = 717
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%)
Strand = Plus / Minus
Query: 1 tcttcgactcctgttctcggtgtccgagtctgagattgtctccacctggtggcagggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcttcgactcctgttctcggtgtccgagtctgagattgtctccacctggtggcagggtgg 458
Query: 61 aggcgtcagtggctgtggctagccaaagaaacaaatggtccacatagaactagaatggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aggcgtcagtggctgtggctagccaaagaaacaaatggtccacatagaactagaatggcc 398
Query: 121 agaagtggctaggtaccaagctagctggcaaatcccaaacaaatgatacccagggaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agaagtggctaggtaccaagctagctggcaaatcccaaacaaatgatacccagggaagga 338
Query: 181 cgatgggctatttagagacaaacctcgtctatcaatgaggaagatgggtccacttacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cgatgggctatttagagacaaacctcgtctatcaatgaggaagatgggtccacttacagc 278
Query: 241 ccagggaaatttgtttgttaaggtctgtgtatgcattagtcctttttgatttccctccat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 277 ccagggaaatttgtttgttaaggtctgtgtatgcattagtcccttttgatttccctccat 218
Query: 301 ccattcccaacgacata 317
|||||||||||||||||
Sbjct: 217 ccattcccaacgacata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
