BAC Information

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BAC

Clone NameMSMg01-055P02
Chromosome4 (Build37)
Map Location 65,948,144 - 65,948,675
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055P02.T7 (MSMg01no055_p02.b1)MSMg01-055P02.TJ (MSMg01no055_p02.g1)
ACCAG283473AG283474
length701709
length of high quality
(start - end)
538 (69 - 606)289 (58 - 346)
definitionCHROMAT_FILE: MSMg01no055_p02.b1 PHD_FILE: MSMg01no055_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:28 2005CHROMAT_FILE: MSMg01no055_p02.g1 PHD_FILE: MSMg01no055_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTCCTTCCAGAAGTGTTCCCTTCTCAAGGAGGCTATGAAGAGCTC
TAAACAGGATTTACTTTGATTAGGTTGAAGAAAGTTCTTGTTCACTTAAT
AAGCATTTTTCCTGAGCATTTTCTATTTGACAGGCACTATTTTAGACTGC
AGGGATATACAGCAGTGAATAACACAGATAAAAACTTATGTACCTGTAGG
GTTTATTATGTAATGTGTGTCTGTACATGGTGAGGGATACTACCAAAAAT
AATGATGTATAAATCTGTCAATAGTGAATTTGGTTAGGGGCTGGAGGCAG
ACTGTCTGATTTCTTCCATACTAGTCCTTCCATATTGGATGATTTGGGGC
ATACCCCAGGCACCCATTGCTGTGTTTGCAAAACAAAGATACAGGTAAGA
TGCCTGATGCCAAGGTTGTGAATCTGGATGCGTTTGTGTCTCCTTGTGAT
TTCAAAGGTTGTCATGGAAGTGAAGAGCAATTTCATGAGCTGTTATTTGG
ATTTAGTCCCCAGAGCCAGAGTAATGGATGTCTATGCTTGGCGGGAACAA
GAGCTTATAAGCCATTTTCACTGGTCATGAACAGAATCTGTTGGAATAAC
ATCATCTGGAGAATAAATTTAGAAGCCAGTCATAGGAACTAACATCTTCC
N
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTAGGAAATCCTAGAGACCAGGGTGAGGGAGGATACCAGGAG
TCAACGCAGATGACCTTAGCAGAAATGGCCAACAATCGGGATCTGGAACC
TGAAGAAACCACCTCCAGTAGCCAGAGAGGACCCTCAGTGGAAGGATAGA
GAAACCATTCCACCTACAAAGCTTTTGACCCAAAATTGGTCCTGATAAAA
ATAATACAGGAACAAAGGTGGAGCACAGTCTGAGGAACGGTCACTAGTGA
CTGGTCCATTTTGAGATCCATCCCATGGGCAGGCATCAATCCCTCAAACT
ATCAATGATGCCATGTTGTGATTGCAGGCACTATCCTAGCATAGCAGCGC
TCTGAAAAGCTGTATCTAGCAGCTGATTGAAATAGATGCATATACCCACA
GCCAAACATTGGACTGAGGTTAGGGACCTCTCACGAAGAGTTAGGGTTAG
GACTGAACGCCCTCATGAACATGCTTTCCCTCCCGAATGACACGTAGTGT
CAACTACCCAGGACCCTTGATACATCCTAGAGATTGAGCCACCACCCTAA
TAGCATACACCGGCCGCTCTAAGTCTTCCTTACATACGTAGCACAGGCTT
GCCTCCGCCCGGCCTTAGCGGGAGAGAATCGCTTTTCATCCCGTTTAAAC
TCGCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_p02.b1 MSMg01no055_p02.b1 CHROMAT_FILE:
MSMg01no055_p02.b1 PHD_FILE: MSMg01no055_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:28 2005
         (538 letters)



>mm_chr4_65947780_65948714
          Length = 935

 Score =  988 bits (511), Expect = 0.0
 Identities = 528/535 (98%), Gaps = 3/535 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcccttctcaaggaggctatgaagagctctaaacaggatttactttgattaggttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tgttcccttctcaaggaggctatgaagagctctaaacaggatttactttgattaggttga 837

                                                                       
Query: 61  agaaagttcttgttcacttaataagcatttttcctgagcattttctatttgacaggcact 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 836 agaaagttcttgttcacttaataagcatttttcctgagcattttctgtttgacaggcacc 777

                                                                       
Query: 121 attttagactgcagggatatacagcagtgaataacacagataaaaacttatgtacctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 attttagactgcagggatatacagcagtgaataacacagataaaaacttatgtacctgta 717

                                                                       
Query: 181 gggtttattatgtaatgtgtgtctgtacatggtgagggatactaccaaaaataatgatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gggtttattatgtaatgtgtgtctgtacatggtgagggatactaccaaaaataatgatgt 657

                                                                       
Query: 241 ataaatctgtcaatagtgaatttggttaggggctggaggcagactgtctgatttcttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ataaatctgtcaatagtgaatttggttaggggctggaggcagactgtctgatttcttcca 597

                                                                       
Query: 301 tactagtccttccatattggatgatttggggcataccccaggcacccattgctgtgtttg 360
           ||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||
Sbjct: 596 tactagtccttccatattggatgatttggggcatatcccaggcacccattg---tgtttg 540

                                                                       
Query: 361 caaaacaaagatacaggtaagatgcctgatgccaaggttgtgaatctggatgcgtttgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 caaaacaaagatacaggtaagatgcctgatgccaaggttgtgaatctggatgcgtttgtg 480

                                                                       
Query: 421 tctccttgtgatttcaaaggttgtcatggaagtgaagagcaatttcatgagctgttattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tctccttgtgatttcaaaggttgtcatggaagtgaagagcaatttcatgagctgttattt 420

                                                                  
Query: 481 ggatttagtccccagagccagagtaatggatgtctatgcttggcgggaacaagag 535
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 419 ggatttagtccccagagccagagtaatggatgtctatgcttggtgggaacaagag 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 935
Length adjustment: 10
Effective length of query: 528
Effective length of database: 925
Effective search space:   488400
Effective search space used:   488400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)