Query= MSMg01no056_a18.b1 MSMg01no056_a18.b1 CHROMAT_FILE:
MSMg01no056_a18.b1 PHD_FILE: MSMg01no056_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:36 2005
(660 letters)
>mm_chr7_13944845_13945901
Length = 1057
Score = 404 bits (209), Expect = e-116
Identities = 391/471 (83%), Gaps = 43/471 (9%)
Strand = Plus / Plus
Query: 220 ctttaatcatctatgaaatagatgtgcattgtggctgtgctctggtcctaagaccttaca 279
||||||||||||||| |||| ||||||||||||| ||||| |||||| |||||||||
Sbjct: 400 ctttaatcatctatggaataaatgtgcattgtggttgtgccctggtcttaagacctttgg 459
Query: 280 cctgctctggtacagagaaagttttcaagaagcattactcatttttcccccaagccaatg 339
|||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 460 cctgctctggtacaaagaaagtttgcaagaggcattactcatttttcccc-aagccaatg 518
Query: 340 ctactttctttttgttaaaaattactatttttttaaagatggtattcaagattat---a- 395
|| ||||||||| ||||||||||||| ||||| || ||| |||||||||||| |
Sbjct: 519 ctggtttctttttattaaaaattactaatttttcaa---tggcattcaagattatgggat 575
Query: 396 ---------catt-----ca------aatagtttgttaatttgttttaccattgcttcct 435
|||| || |||||||||||||||||||| |||||| |||||
Sbjct: 576 tcatcatggcattttatacacatacgaatagtttgttaatttgtttc-ccattgtttcct 634
Query: 436 ttg-gccttccttctttctcatgtgggtcttcttcctcccttcaaacaat--cctctcct 492
|| ||||||||||||||| |||||||||||||||||||||||||| | | |||| ||
Sbjct: 635 tttagccttccttctttcttatgtgggtcttcttcctcccttcaaatattttcctc--ct 692
Query: 493 actcttgtatgtattcacaaatatgtattttaatctatgttcatcgtgtaaaagaagaca 552
||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 693 gctcttgtatgtatgcacaaatatgtattttaa-----gttcagcatgtaaaagaagaca 747
Query: 553 tgcaatattcattc--tgttttaactctca-ttttcctcttgccctccatctcttaggat 609
||||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 748 tgcaatattt-ttcctttttttatctctcaattttcctcttgccctccatctcttaggat 806
Query: 610 tctttacttccagcaaattgtcccacttacactttgatgacttatataata 660
|| || |||||||||||||||||| ||| ||||| || ||||||||||||
Sbjct: 807 tccttccttccagcaaattgtcccccttgtactttcataacttatataata 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1057
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1047
Effective search space: 680550
Effective search space used: 680550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_a18.g1 MSMg01no056_a18.g1 CHROMAT_FILE:
MSMg01no056_a18.g1 PHD_FILE: MSMg01no056_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:36 2005
(640 letters)
>mm_chr4_79617567_79618606
Length = 1040
Score = 1083 bits (560), Expect = 0.0
Identities = 621/644 (96%), Gaps = 5/644 (0%)
Strand = Plus / Plus
Query: 1 agtacaaattgacatt-----taaaaaaaaccaggagagatctggggatgaaatgggtcc 55
|||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||
Sbjct: 196 agtacaaattgacattaaaaaaaaaaaaaaacagtagagatctggagatgaaatgggtcc 255
Query: 56 atacaagaagtttatggttcaagattggccccaccacaagggaggaaactactgtattta 115
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 256 atacaagaagtttatggttcaagataggccccaccacaagggaggaaactactgtattta 315
Query: 116 aattggaagctattagaaacacaagattgttttgttcttatagagaaatatagacccaca 175
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 316 aattggaagctattagaaacacaagattgttttgttcttatagagaaatataaacccaca 375
Query: 176 aagaatttaaccttttctttgactccttcatgcataaactcaattcttaaggaacaagga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagaatttaaccttttctttgactccttcatgcataaactcaattcttaaggaacaagga 435
Query: 236 tgttcagtcatttctttgaaatgatattgaacttaccacaaaataagacatttgaaatat 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgttcagtcgtttctttgaaatgatattgaacttaccacaaaataagacatttgaaatat 495
Query: 296 cactcttccttttgaaaacaaggtaaagctataattatttgacacatttatctttattac 355
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 496 cactcttccttttgaaaacaaggtaaagctacaattatttgacacatttatctttattac 555
Query: 356 aggatgccaagattccaggagactaagtttccgggaactttttgctgggaactgcgtgca 415
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 556 aggatgccaagattccaggagactaagtttcctggaactttttgctgggaactgcatgca 615
Query: 416 ggcttttgggcctgtcacgcgtcactactggagtggatgtatcagaaaaggacgatggaa 475
|||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct: 616 ggcttttgggcctgtcacttgtcactactggagtggatgtagcagaaaaggaagatggaa 675
Query: 476 aggtttggggtgaagatcacattgatttaattttctcactgattcaaatgaggaagtgag 535
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 676 aggtttggggtgaagatcacattgatttaattttctcactgattcaaacgaggaagagag 735
Query: 536 cacaggcaattatagatcaaaacagaagtctgaagagtggcctaatatctatcagcagtc 595
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gacaggcaattatagatcaaagcagaagtctgaagagtggcctaatatctatcagcagtc 795
Query: 596 agatatcaaaacacaaaaccccagagacttaattatccatactc 639
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agatatcaaaacacaaaaccccagagacttaattatccatactc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
