Query= MSMg01no056_e15.b1 MSMg01no056_e15.b1 CHROMAT_FILE:
MSMg01no056_e15.b1 PHD_FILE: MSMg01no056_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:54 2005
(649 letters)
>mm_chr4_142171017_142172065
Length = 1049
Score = 1065 bits (551), Expect = 0.0
Identities = 612/645 (94%), Gaps = 20/645 (3%)
Strand = Plus / Minus
Query: 5 gaattccaccatcacccatagcttccatgactgttctctgctagttacatgtttctagaa 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 gaattccaccatcatccatagcttccatgactgttctctgctagttacatgtttctagaa 890
Query: 65 ggttctttaatacccatccatccatccatccatccatccatccatccatccatccattca 124
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 889 ggttctttaatac--------------------ccatccatccatccatccatccattca 850
Query: 125 ccttctggtacctgaactgcactgtgtgccaatcctagggtgacggagttgaagacagac 184
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 849 ccttctggtacctgaactgcactgtgtgccaatcctagggtaacagagttgaagacagac 790
Query: 185 ctgtcccttgtcctcagggggattccaatccagctcacttacacttacaactatgttctg 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 789 ctgtcccttgtcctcagggggattccagtccagctcacttacacttacaactatgttctg 730
Query: 245 ggtttccattttgtaagaagtctattctgaggtacagtgagtttggagtagggaacagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggtttccattttgtaagaagtctattctgaggtacagtgagtttggagtagggaacagaa 670
Query: 305 aactagttcccttccactagagcttgagtctaggtctctgctagacactactcggggtgc 364
||||||||||||||||||||||| |||||||||||||||| |||||||||||| | || |
Sbjct: 669 aactagttcccttccactagagcctgagtctaggtctctgatagacactactccgagttc 610
Query: 365 ccagtgaaaagtaacctgttgggcagggtcagcttgcagagtttatcttttatgctttat 424
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccagtgaaaagtaacctattgggcagggtcagcttgcagagtttatcttttatgctttat 550
Query: 425 atacttgcattgaagacacttaaatggtgggatgaagaccctctaaatacatacttaccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atacttgcattgaagacacttaaatggtgggatgaagaccctctaaatacatacttaccc 490
Query: 485 atggggttcctggtatattccaagcatcagataatggtcacatttctgcaaggggggttg 544
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 atggggttcctggtatattctaagcatcagataatggtcacattcctgcaaggggggttg 430
Query: 545 acaacaatagagtagccagtgctggcagatgctaataatgtgctggggccttcacttgga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acaacaatagagtagccagtgctggcagatgctaataatgtgctggggccttcacttgga 370
Query: 605 tttataagcactgcttcaaagcacctccaggaagctttatgatcc 649
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 tttataagcactgcttcaaagcaccttcaggaagctttatgatcc 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_e15.g1 MSMg01no056_e15.g1 CHROMAT_FILE:
MSMg01no056_e15.g1 PHD_FILE: MSMg01no056_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:55 2005
(265 letters)
>mm_chr4_142135783_142136447
Length = 665
Score = 484 bits (250), Expect = e-141
Identities = 263/270 (97%), Gaps = 5/270 (1%)
Strand = Plus / Plus
Query: 1 acttctccagagtgaggtgacagatgacaggaggatcaccagaaaggctttagggccaac 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 acttctccagagtgaggtgacagatgacaggaggatcaccagagaggctttagggccaac 260
Query: 61 tagcataccttgaagtgaagacatccacctgggattgtccttggaccacacacacccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcataccttgaagtgaagacatccacctgggattgtccttggaccacacacacccagt 320
Query: 121 agtacatgtgtgtctacagatatacatgaaacacacacatacacacatacacattacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtacatgtgtgtctacagatatacatgaaacacacacatacacacatacacattacaca 380
Query: 181 cacatatgcacgcaatatttttttttt-----aaataggagggataacatatgtctcttc 235
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 381 cacatatgcacgcaatattttttttttttaaaaaataggagggataacacatgtctcttc 440
Query: 236 tgagtgacattgacatgtggctgtgaagga 265
||||||||||||||||||||||||||||||
Sbjct: 441 tgagtgacattgacatgtggctgtgaagga 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
