Query= MSMg01no056_i23.b1 MSMg01no056_i23.b1 CHROMAT_FILE:
MSMg01no056_i23.b1 PHD_FILE: MSMg01no056_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:15 2005
(650 letters)
>mm_chr4_37937877_37938927
Length = 1051
Score = 1106 bits (572), Expect = 0.0
Identities = 628/650 (96%), Gaps = 8/650 (1%)
Strand = Plus / Minus
Query: 5 gaattctcattggcactaagttgagacagaattgaatatgtaggttctcttggccttgag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattctcattggcattaagttgagacagaattgaatatgtaggttctcttggccttgag 672
Query: 65 aacattttgaaaatatggatctgtccaatccacgaacataggtgcatttccatttgagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aacattttgaaaatatggatctgtccaatccacgaacataggtgcatttccatttgagtg 612
Query: 125 tgtcttcttcaatgatgtca-tttttttcaatagaggaacatatttatcgttaagatgct 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgtcttcttcaatgatgtcattttttttcaatagaggaacatatttatcgttaagatgct 552
Query: 184 atcaaatgttctaatatattagaatatattattatataggtacatcatgtatttgtatat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atcaaatgttctaatatattagaatatattattatataggtacatcatgtatttgtatat 492
Query: 244 atacataatatatattcttatgataatatgtaagcacactcatatatcaaactcaaagct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atacataatatatattcttatgataatatgtaagcacactcatatatcaaactcaaagct 432
Query: 304 aaataaatgatagtcaacatctagtcactgaagcacatccttaactctagttgacattat 363
||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 431 aaataaatgatagtcaatatctagtaactgaagcacatccttaagtctagttgacattat 372
Query: 364 tcacaaattattttttacgttcgaagcagatttgttttttttaatttttatttattttta 423
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 371 tcaccaattattttttacgttcgaagcagatttgtttttttaaatttttattt----tta 316
Query: 424 gttttattttattgttattattattattatta---ctttattcactttgcatcctcttca 480
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 315 gttttattttattgttattattattattattattactttattcactttacatcctcttca 256
Query: 481 ctctcttcctatcagcctatcccacaatcactccttattcctccaatctcaccatctcac 540
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 255 ctctcttcccatcagcctatcccacaatcattccttattcctccaatctcaccatctcaa 196
Query: 541 catccatccatccctttctcctctgaaagtgtataggcttcctttggtttccccctaacc 600
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 195 aatccatccatccctttctcctctgaaagggtataggcttcctttggtttccccctaacc 136
Query: 601 tgatttatcagatctctgtgggactaggcatacctgctcctactgagacc 650
|||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 135 tgatttatcagatctctgtggggctaggcatacccgctcctactgagacc 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_i23.g1 MSMg01no056_i23.g1 CHROMAT_FILE:
MSMg01no056_i23.g1 PHD_FILE: MSMg01no056_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:15 2005
(625 letters)
>mm_chr4_37882212_37883236
Length = 1025
Score = 1170 bits (605), Expect = 0.0
Identities = 620/625 (99%)
Strand = Plus / Plus
Query: 1 attaatacaactttcatataacctatgaattaatgtaccttggtttggaaaaagtagtta 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 attaatacaactttcatataacctatgagttaatgtaccttggtttggaaaaagtagtta 260
Query: 61 ttcttgtgactaatgttttgtttattttatgagataccatacaaatatgtaatgcaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgtgactaatgttttgtttattttatgagataccatacaaatatgtaatgcaaaca 320
Query: 121 gtattctattatgaactaatatattcatggaagtattcccttaaatgaaccaactatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattctattatgaactaatatattcatggaagtattcccttaaatgaaccaactatgat 380
Query: 181 tcatttaagttacataactggagttatcagattattttaaaaaattctaatgagaatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatttaagttacataactggagttatcagattattttaaaaaattctaatgagaatttt 440
Query: 241 ccaacgtattggtggtttttacagtcaatgtcctataattctgcttcctatactgaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaacgtattggtggtttttacagtcaatgtcctataattctgcttcctatactgaagat 500
Query: 301 aacctttctgataatagtgagatgtagtatgcatacatgtctgtcaaaacaatgaaattt 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacccttctgataatagtgagatgtagtatgcatacatgtctgtcaaaacaatgaaattt 560
Query: 361 gctttttttcagcaacatttattgatactatgagctatataaaatacttagtggtgcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctttttttcagcaacatttattgatactatgagctatataaaatacttagtggtgcaca 620
Query: 421 ttttttgactctggtaaacaaagcaagaattattcttttgggttacctcactcaggatga 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 ttttttgactctggtaaacaaagcaagaattattcctttgggttacctcactcaggatga 680
Query: 481 tatcccccagatctatacatttgcctaaaaatttcataaactcattgtttttaatagttt 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 681 tatcccccagatctatacatttgcctaagaatttcataaactcattgtttttaatagctt 740
Query: 541 agtagtactccattgtataaatgtgccacattttctatatccattcctctgttgaggggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtagtactccattgtataaatgtgccacattttctatatccattcctctgttgaggggc 800
Query: 601 atctgggtactttccagattctggc 625
|||||||||||||||||||||||||
Sbjct: 801 atctgggtactttccagattctggc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
