Query= MSMg01no056_k22.b1 MSMg01no056_k22.b1 CHROMAT_FILE:
MSMg01no056_k22.b1 PHD_FILE: MSMg01no056_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:24 2005
(411 letters)
>mm_chr4_63878868_63879678
Length = 811
Score = 574 bits (297), Expect = e-168
Identities = 326/337 (96%), Gaps = 3/337 (0%)
Strand = Plus / Minus
Query: 78 actgctggcaagcttgggtttagacgaatgggaggagcaaatgaaa---tagaggctccc 134
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 811 actgctggcaagcttgggtttagacgaatgggaggagcaagtgaaatagtagaggctccc 752
Query: 135 aacttagctaaaagatcccttctcaataagagaacaagacacgttggcactaccaaaaag 194
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 751 aacttagctaaaagatcccttctcaataagagaacaagacatgttggcactaccaaaaag 692
Query: 195 gaatgggtgaggggtacattcctaaaaatgcaaccaagtagtggagactgatgaggatga 254
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 691 gaatgggtgaggggtacactcctaaaaatgcaaccaagtagtggagactgatgaggaaga 632
Query: 255 taaggttgtcttcctgccccctaccctgatgataggaaaacatgaaggtgaagtgggtct 314
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 631 taaggttgtcttcctgccctctaccctgatgctaggaaaacatgaaggtgaagtcggtct 572
Query: 315 ccaaaactctgtcaggaccgagtaagtggctccggtggccaataggaaggaaatgggctg 374
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 571 ccaaaactctgtcaggaccgagtaagtggctccgctggccaataggaaggaaatgggctg 512
Query: 375 cccacataccatgatagctacctggagctccctgcta 411
|||||||||||||||||||||||||||||||||||||
Sbjct: 511 cccacataccatgatagctacctggagctccctgcta 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_k22.g1 MSMg01no056_k22.g1 CHROMAT_FILE:
MSMg01no056_k22.g1 PHD_FILE: MSMg01no056_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:25 2005
(253 letters)
>mm_chr4_63732125_63732777
Length = 653
Score = 395 bits (204), Expect = e-114
Identities = 243/260 (93%), Gaps = 10/260 (3%)
Strand = Plus / Plus
Query: 1 aattctctgttgttttctccagaaaaactgccata------a-at-tatatatatatata 52
||||||||||||| ||||||||||||||||| ||| | || ||||||||||||||
Sbjct: 195 aattctctgttgtattctccagaaaaactgctatagattatatatatatatatatatata 254
Query: 53 tatatatatatatacacacacacacacacatacacacatacacacatacacacacataca 112
|||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||
Sbjct: 255 tatatatatatatatatatacacacacac--acacacatacacacatacacacacataca 312
Query: 113 tatgtttgtgtctgtatgtgttggtatctgagtgggatcatttgtgtgcatatactcaca 172
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatgtgtgtgtctgtatgtgttggtatctgagtgggatcatttgtgtgcatatactcaca 372
Query: 173 cacaatcacatgtgtgtgatggaggcaagagtgaaaccacaagtaccaatcctctagagc 232
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cacaagcacatgtgtgtgatggaggcaagagtgaaaccacaagtaccaatcctctagagc 432
Query: 233 acctcccaccatttaaaaac 252
||||||||||||||||||||
Sbjct: 433 acctcccaccatttaaaaac 452
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 260 tatatatatatatatatatatatatata 233
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 262 tatatatatatatatatatatatatata 235
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 264 tatatatatatatatatatatatatata 237
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 266 tatatatatatatatatatatatatata 239
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 268 tatatatatatatatatatatatatata 241
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 270 tatatatatatatatatatatatatata 243
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 272 tatatatatatatatatatatatatata 245
Score = 54.9 bits (28), Expect = 5e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 39 tatatatatatatatatatatatatata 66
||||||||||||||||||||||||||||
Sbjct: 274 tatatatatatatatatatatatatata 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 9
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
