Query= MSMg01no056_p20.b1 MSMg01no056_p20.b1 CHROMAT_FILE:
MSMg01no056_p20.b1 PHD_FILE: MSMg01no056_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:47 2005
(521 letters)
>mm_chr4_24168534_24169454
Length = 921
Score = 928 bits (480), Expect = 0.0
Identities = 507/516 (98%)
Strand = Plus / Plus
Query: 6 gaattctgcagtatttaccttaatatgaagaaaaatacaaagtattagaaagtcaagcca 65
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgcagtatttaacttagtatgaagaaaaatacaaagtattagaaagtcaagcca 265
Query: 66 aacatcagaatgaccacctctgattctacagaaatacaatccctgcattatttaaaatat 125
||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 266 aacatcaaaatgaccaattctgattctacagaaatataatccctgcattatttaaaatat 325
Query: 126 gctatcattttagatagagccaacactctccctaaaagtatgttcttttcctttgtgagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gctatcattttagatagagccaacactctccctaaaagtatgttcttttcctttgtgagt 385
Query: 186 agaatcctgggttaaatccatgaagtctgtgcagcactgccttccccttttattgtaagt 245
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 386 agaatcctgggttaaatccatgaagtctgtgcagcgctgccttccccttttattgaaagt 445
Query: 246 gttaatgtataagaaagtgtgctgtgcccgtcaccctttcatctacttcactacgtggga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttaatgtataagaaagtgtgctgtgcccgtcaccctttcatctacttcactacgtggga 505
Query: 306 tctgtttgctgaggtctggagtggtgaggcacacgtatcatttctgtgcctcttaaaacc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctgtttgctgaggtctggagtggtgaggcacacgtatcatttctgtgcctcttaaaacc 565
Query: 366 ttcaaatagcatcaactcagatgtaaatgtgtttcttgagcaatagcttgcaaatgtgtc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttcaaatagcatcaactcagatgtaaatgtgtttcttgagcaatagcttgcaaatgtgtc 625
Query: 426 ttttcctctttgcatggtgaggtagaagtgtttcaatcctccaaaaatctacaagtgaga 485
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 626 ttttcctctttgcatggtgaggtagaagtgtttcaatcctcgaaaaatctacaagtgaga 685
Query: 486 tttatcttcattgtgccagatttcttgccaaccttc 521
||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttatcttcattgtgccagatttcttgccaaccttc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_p20.g1 MSMg01no056_p20.g1 CHROMAT_FILE:
MSMg01no056_p20.g1 PHD_FILE: MSMg01no056_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:47 2005
(401 letters)
>mm_chr4_24342039_24342838
Length = 800
Score = 586 bits (303), Expect = e-172
Identities = 344/359 (95%), Gaps = 3/359 (0%)
Strand = Plus / Minus
Query: 1 ctgccctaagggtctctgaatgcctcaagactgatgagcttttatgaataatgcaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgccctaagggtctctgaatgcctcaagactgatgagcttttatgaataatgcaaaact 300
Query: 61 cccctttgttatgtaaatgagccaacacttgcctaatagggaataagactgacaaatatt 120
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 cccttttgttatgtaaatgagccaacacttgcctaatagggaataaaactgacaaatatt 240
Query: 121 tttactttttaatgcaagatggacaga---ttttttttctttaaaaaaccttatttatgc 177
||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 239 tttactttttaatgcaagatggacagatttttttttttatttaaaaaatcttatttatgc 180
Query: 178 atatgagtgttgcctgcatgttttaccacgtacatacttggtcactagaggagggcatca 237
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 179 gtatgagtgttgcctgcatgttttaccacatacacacttggtcactagaggagggcatca 120
Query: 238 gattacttggaagtggaattacaggttgtaggcagctatgtggtgcttgggattgagcct 297
|||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 119 gattacttggaagtgggattacaggttgtaggcagctccgtggggcttgggattgagcct 60
Query: 298 aggttttctagaagagcatccagtgatcttgattgctgagccatctttccaacctagat 356
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 59 aggttttctagaagagcatccagtgaccttgattgctgagccatctttccaacctagat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 800
Length adjustment: 9
Effective length of query: 392
Effective length of database: 791
Effective search space: 310072
Effective search space used: 310072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
