XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGC
CTCCCTTAATGATTGCTTTTTTTCCAAGAACTGTGTGCACTCTGAGCTGT
ACTTAGTAATTGCGATTGGAAACATCTGCAATTATCTGGCAGCAGTATCA
CTGACCCTTTCTCTAAGTTTTCTCCTGGACATCTACTGCATAAGCTTAGC
TGATCATCACCCACAAAACATTATAAAATGACTTTCATTTTTCAAGCTAT
TTATATAAGAAACTAACAAACAAGCACAATTTCTTGGCTTCCAACTTCTG
CCATATTTACTGCAGACTCTTGTGCAAAACTAACCTTACAGTCTTCTTGG
CTTTTCTGAATTTCTATATTTTGTTTATTCTTTAAATTTCTCTAAGAGAA
ACCCACGAAGACTCACCGCCCCCCACCGCACACACACACAAGTAACCACT
TGATGAAAAATTAGCAGTACAGCACTGGCTTTGATACAGGGGTCCCTAAA
TGCATCTCCCTAAATTGTTTCCTTAATGATGACGATCTGAAACTGATTCA
TACCCATCATAGAGCAGTGCTGGAAGGAATGCAGAAGCAGAGCCTCATCC
GAACTGGTTAGACTCCAGCCTAGTCCTTATCCAAACAGGTTACCCCAAGT
CCACTGGGGGGGACGAGCCTGTGCAGA

AATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGCCAACAACTCCACAGGAGAAAAAACA
TTTGTGTCATAAGGATTTTTGTTATCCTGTAGTACCCCTACCCTATGGTT
GGAGCATTGTCACTTCTTATAGGGAGTAATTCCATTTAAACTCTGTAGAA
ATGTGTCTATTTTATGACAGTCCTTCTGGGGAAATGTGAAAAAAAATCTG
CTCTATCCAGATAGGGAATGTACAGTAGACCAAACTACAAACAGCACCAA
AGTCCAACATTGTGAACCTAGGAGTTTTATTGCGGTTACTTACAGGACTA
TGGTATAGGGTTTGTGCAGAAGCAGAAATGAATAAAAGATACGGGCATCA
CCAAAGCCCACCCTGCTGTGGGTAAAAGCTCACAAAGCCAGAAAGCTAAC
GTGCACTGTGTAGCTTGTAGGCAGAGCAACAGGTTGGAGAGCATTCTTTC
CAAGTGGCTCGCACCAACTGCTTCTCTTCCTGGCTGCTCAGCTTTCAGGC
ATGTCCTCCGCAGTTCTTACTGCTTACGAGTTCTATTGGAGTATGAGGGC
CTCGTGAATCTGGTCAGTTTGAGGGACTTCTGGAGCTATTTTGATTAATC
ACTTCCTGAGCTTAAAGAGCTTCCCTGTAGGATAAA

Query= MSMg01no057_c14.b1 MSMg01no057_c14.b1 CHROMAT_FILE:
MSMg01no057_c14.b1 PHD_FILE: MSMg01no057_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:01 2005
         (529 letters)



>mm_chr4_80963654_80964583
          Length = 930

 Score =  907 bits (469), Expect = 0.0
 Identities = 505/517 (97%), Gaps = 3/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgattgctttttttcca-agaactgtgtgcactctgagctgtacttagtaattgcg 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttaatgattgctttttttccacagaactgtgtgcactctgagctgtacttagtaattgcg 657

                                                                       
Query: 60  attggaaacatctgcaattatctggcagcagtatcactgaccctttctctaagttttctc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 attggaaacatctgcaattatctggcagcagtatcactgaccctttctctaagttttctc 597

                                                                       
Query: 120 ctggacatctactgcataagcttagctgatcatcacccacaaaacattataaaatgactt 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctggacatctagtgcataagcttagctgatcatcacccacaaaacattataaaatgactt 537

                                                                       
Query: 180 tcatttttcaagctatttatataagaaactaacaaacaagcacaatttcttggcttccaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 536 tcatttttcaagctatttatataagaaactaacaaacaagcacaatttctcggcttccaa 477

                                                                       
Query: 240 cttctgccatatttactgcagactcttgtgcaaaactaaccttacagtcttcttggcttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 476 cttctgccatatttactgcagactcttgtgcaaaactaaccttacagtcttcttgacttt 417

                                                                       
Query: 300 tctgaatttctatattttgtttattctttaaatttctctaagagaaacccacgaagactc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 416 tctgaatttctatattttgtttattctttaaatttctctaagagaaacccatgaagactc 357

                                                                       
Query: 360 accgccccccaccgcacacacacacaagtaaccacttgatgaaaaattagcagtacagca 419
           ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 356 accgcaccccaccgcgcacacacacaagtaaccacttgatgaaaa-ttagcagtacagca 298

                                                                       
Query: 420 ctggctttgatacaggggtccctaaatgcatctccctaaattgtttccttaatgatgacg 479
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctggctttgataaaggggtccctaaatgcatctccctaaattgtttccttaatgatgacg 238

                                                
Query: 480 atctgaaactgattcatacccatcatagagc-agtgc 515
           ||| ||||||||||||||||||||| ||||| |||||
Sbjct: 237 atccgaaactgattcatacccatcacagagctagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space:   477480
Effective search space used:   477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)