BAC Information

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BAC

Clone NameMSMg01-057C15
Chromosome4 (Build37)
Map Location 93,725,302 - 93,725,531
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057C15.T7 (MSMg01no057_c15.b1)MSMg01-057C15.TJ (MSMg01no057_c15.g1)
ACCAG284391AG284392
length766695
length of high quality
(start - end)
263 (43 - 305)311 (325 - 635)
definitionCHROMAT_FILE: MSMg01no057_c15.b1 PHD_FILE: MSMg01no057_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:01 2005CHROMAT_FILE: MSMg01no057_c15.g1 PHD_FILE: MSMg01no057_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGGGAGGAGCCGCGGAAT
TCACATTTCTTCCAGTTGATTCCTGCTTTTATCTTTCCAGACTACTTCTT
AAACTTCCTTTTAAAAGAAAAAATTATGTACAGATCTGGAGACAGGAACT
TGTGTCAAAGAGCCAACCTGTTGCTTGGGACTTCCACCACCCCTTACACA
CACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTG
TTTTTTTCCCCTTCTTTTTTTTTTTTTCCTCCCTCCCCCCCCNCCCCCTT
CTCTCTTTTATTTTTTCCTCCCCCCCCCATCTCCTTTCCTTTTTTCATAT
TTTTTTATTTTATCTTTTCACCCCCCCCCAACCTTTTATATTCATCTCCC
ACTCATATTANCCCTCTTCTTTTACCTTCTATCTTCTCTTATTGCCCTCT
CTCTCTTTTCTCCCCCTCCATATATTGTCCCCTCTTCCCTTCCCTTACCA
ACATTCCTATCACTCTCATTTTACTATATTACATTCACTAACAACATCTT
ATATTTATAACCTTCACCTCCTAACTCCCATTTCGCTCGTATCTTTTCCC
CTGTCCTGCTTTATTCTCAATTCTTCATTCGGTTAACTACCTATAATATA
TTTTTTGTTGCGCTATTAGTCCACCTTCTGTCATTCTCATTTCTCTTCTT
ATCCAGCTTACCTTCG
AATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTCTAACGGAGAGGTGAACT
ATAGAAGTTTCCGAAAAATTCAGTTAAATAGAAACAACAACAACAACAAC
AACAACAACAACAACAACAACCTTAAGAATCATTGAAACCAAGAGTTGGT
TCTTTAAGAAAATTAATGAAACTGATAAACTCTTATCCAACTTAACTAAG
AGACAGAGGGAAGAACCAAAATAACAAAATTAGAAATGAAAAGGGGATAT
AACAGCCTAAACTGAGGAAATTCAGAGACTTATAAGGGCCTACTTTAAAA
GGCTTTTCTTCATCAAATAGTAATTGTTGAGGTTTTGTCCTTTGTTGCTT
ATTCTAATGTTAAGAGCTGGCCTCTAAGATCTGGAGTTCTCAAGTAGCCT
CTGGGACCCTGACCCCCAACTGAATTTCAATTGGTGAATAAAGACCAGCA
GCCAATAACTGGGGAGAAAAGAGACAGGTAGGCTTGAGACCTTAACAAGA
AGATGGAGGAGAGAGTGAAGGCTGCCACGGGATAGAAGAGTGTGCAGGAG
AGGAGAAAGGAGAGAGAGCCTTCATGGGATAGAGGCCAAGAGAACATGGC
CCAGAGGGCTGCCTGGTTGGAGCTGAGAGCAGCTCAGATGACACGTGGTA
AAAAATAGCTTGGATTATGGATAGGAGGTAGATTGTAACAGCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_c15.b1 MSMg01no057_c15.b1 CHROMAT_FILE:
MSMg01no057_c15.b1 PHD_FILE: MSMg01no057_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:01 2005
         (263 letters)



>mm_chr4_93725098_93725761
          Length = 664

 Score =  398 bits (206), Expect = e-115
 Identities = 224/230 (97%), Gaps = 1/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatttcttccagttgattcctgcttttatctttccagactacttcttaaactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatttcttccagttgattcctgcttttatctttccagactacttcttaaactt 264

                                                                       
Query: 65  ccttttaaaag-aaaaaattatgtacagatctggagacaggaacttgtgtcaaagagcca 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttttaaaagaaaaaaattatgtacagatctggagacaggaacttgtgtcaaagagcca 324

                                                                       
Query: 124 acctgttgcttgggacttccaccaccccttacacacacacacacacacacacacagagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | 
Sbjct: 325 acctgttgcttgggacttccaccaccccttacacacacacacacacacacacacacacac 384

                                                             
Query: 184 agagagagagagagagagagagagagagagagagagagagagagagagag 233
           | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacagagagagagagagagagagagagagagagagagagagagagagag 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 664
Length adjustment: 9
Effective length of query: 254
Effective length of database: 655
Effective search space:   166370
Effective search space used:   166370
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)