Query= MSMg01no057_j20.b1 MSMg01no057_j20.b1 CHROMAT_FILE:
MSMg01no057_j20.b1 PHD_FILE: MSMg01no057_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:37 2005
(525 letters)
>mm_chr4_149827493_149828418
Length = 926
Score = 948 bits (490), Expect = 0.0
Identities = 517/526 (98%), Gaps = 1/526 (0%)
Strand = Plus / Plus
Query: 1 gctagggttataggattacaccatcatatctgactgctttgtgtcctgtgttac-aacaa 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gctagggttataggattacaccatcatatctgactgctttgtgtcctgtgttagtaacaa 260
Query: 60 aagttgttactattgtttgtgtgtgtttgtgcatgtggccctgtgccaaggcaatgcaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttgttactattgtttgtgtgtgtttgtgcatgtggccctgtgccaaggcaatgcaga 320
Query: 120 tgagagccagaggacagcataacagaggtcagcgaactttcctttttctctttaaccttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagccagaggacagcataacagaggtcagcgaactttcctttttctctttaaccttt 380
Query: 180 ttcatcttctgtttgttcggttcttgtttctggctttttcatttctaggtgatttttttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatcttctgtttgttcggttcttgtttctggctttttcatttctaggtgatttttttt 440
Query: 240 tcttcatttctgatgtagactctttattctttgagccatctatttgacagtatctttgct 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 tcttcatttctgatgtagactctttattctttgagccatctatttgacagtatctttgtt 500
Query: 300 ttgatacagcttgcttctcttaggatgtctgcatgcatatacgtttccccccgctttctt 359
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ttgatacagtttgcttctcttaggatgtctgcatgcatatacgtttccccttgctttctt 560
Query: 360 cagcagcataggcattattctactttttattttagttactgattttaggttattttggga 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcagcataggtattattctactttttattttagttactgattttaggttattttggga 620
Query: 420 aacaatcgcactcctccgtagctgagcttataaaactctgctctgtaacatcagatttct 479
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 aacaatcgcactcccccgtagctgagcttataaaactctgctctgtaacattagatttct 680
Query: 480 cttgctccttttttagtgaatttaattttcctaaattttttgaccg 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgctccttttttagtgaatttaattttcctaaattttttgaccg 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 926
Length adjustment: 10
Effective length of query: 515
Effective length of database: 916
Effective search space: 471740
Effective search space used: 471740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_j20.g1 MSMg01no057_j20.g1 CHROMAT_FILE:
MSMg01no057_j20.g1 PHD_FILE: MSMg01no057_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:37 2005
(282 letters)
>mm_chr4_149984636_149985318
Length = 683
Score = 532 bits (275), Expect = e-155
Identities = 281/283 (99%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 actggaaggtggtctggagggcgtgttgacaggggtggacgctgtgcgagtcttaattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 actggaaggtggtctggagggcgtgttgacaggggtggacgctgtgcgagtcttaattct 424
Query: 61 tctgaa-actgcctgcctgcggtggcggcggtgggcacgggagctggccgcctctggtgt 119
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctgaacaccgcctgcctgcggtggcggcggtgggcacgggagctggccgcctctggtgt 364
Query: 120 tttcttccagtagtaatagaaggtaatcagttccccctgcaagacagaaaggcagctgta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttcttccagtagtaatagaaggtaatcagttccccctgcaagacagaaaggcagctgta 304
Query: 180 gtgtgcacccgcacagctctcccatcatcacatcctcctgtgcctgctgctgagcagggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtgtgcacccgcacagctctcccatcatcacatcctcctgtgcctgctgctgagcagggg 244
Query: 240 gcagcagtgttccagagtgaagcttgagggttccgtcctgcag 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcagcagtgttccagagtgaagcttgagggttccgtcctgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space: 184002
Effective search space used: 184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
