Query= MSMg01no058_a15.b1 MSMg01no058_a15.b1 CHROMAT_FILE:
MSMg01no058_a15.b1 PHD_FILE: MSMg01no058_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:11 2005
(556 letters)
>mm_chr4_45786819_45787774
Length = 956
Score = 861 bits (445), Expect = 0.0
Identities = 536/591 (90%), Gaps = 42/591 (7%)
Strand = Plus / Minus
Query: 1 aaaggaaaccccagattctaatggctttgctgtgagcctaataccgagcgatttcagaaa 60
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 807 aaaggaaaccccagattctaatggctttgctgcgagcctaataccgagtgatttcagaaa 748
Query: 61 gaaagagtaccaatcctacaccaactcttacagaaaatagaagaggaggaaacacttctc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 747 gaaagagtaccaatcctacaccaactcttatagaaaatagaagaggaggaaacacttctc 688
Query: 121 tatcattttagaggcctaatgccctccctccgagcagacaaagacggtccttacagaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tatcattttagaggcctaatgccctccctccgagcagacaaagacggtccttacagaagg 628
Query: 181 atagctacagcctaaaattcctcatgaatatagatgcaaaa-aatcctcaagaaaatatt 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 627 atagctacagcctaaaattcctcatgaatatagatgcaaaagaatcctcaagaaaatatt 568
Query: 240 atcaaatcagtgtgtgtaaagattgttcagaaccgactcactgggaatgccacactgggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atcaaatcagtgtgtgtaaagattgttcagaaccgactcactgggaatgccacactgggg 508
Query: 300 agtggtgagcagacactgaagacagagagaggagctacagttgcaaagcccagggactgc 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agcggtgagcagacactgaagacagagagaggagctacagttgcaaagcccagggactgc 448
Query: 360 tttttctttgatacccatctcaggtatcccaggttggccacaaacttgctatatagtcag 419
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 447 tttttctttgatacccatctcaggtatcccaggttggccacaaacttgctctgtagtcag 388
Query: 420 agataaccttgaacaacttcttcttcttcttt------------ttt------------- 454
||||||||||| |||||||||||||||||| |||
Sbjct: 387 agataaccttg---aacttcttcttcttctttttcttcctcttctttcttcttcttcttc 331
Query: 455 ------------taagacagggtttctctgtgtagccctggctgtcctggagctcactct 502
| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttcttgttcttctgagatggggtttctctgtgtagccctggctgtcctggagctcactct 271
Query: 503 gtagaccaggtttggcctcgaactcataaatctacctgcctctgccttcca 553
||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct: 270 atagaccagg-ctggcctcaaactcagaaatctacctgcctctgccttcca 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_a15.g1 MSMg01no058_a15.g1 CHROMAT_FILE:
MSMg01no058_a15.g1 PHD_FILE: MSMg01no058_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:11 2005
(349 letters)
>mm_chr4_45670876_45671624
Length = 749
Score = 613 bits (317), Expect = e-180
Identities = 344/359 (95%), Gaps = 10/359 (2%)
Strand = Plus / Plus
Query: 1 aattaatatacatacagaaaaagaaatgctaaagagcactaaccagaccagaaaaattat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aattaatatacatacagaaaaagaaatgctaaagagcactaaccagacaagaaaaattat 260
Query: 61 atttgatagaattattctacagaaaataataaaaagcattagaaatggaaactatatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgatagaattattctacagaaaataataaaaagcattagaaatggaaactatatggt 320
Query: 121 aactacatttttttaatactgcttaaaagctttttaaaggtaacttgctattcgcataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactacatttttttaatactgcttaaaagctttttaaaggtaacttgctattcgcataga 380
Query: 181 gcaattatagttcactatagggtttatagtatgtgtaacagtacaggtctaacaatagca 240
| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtaattatagttcaatatagggtttatagtatgtgtaacagtagaggtctaacaatagca 440
Query: 241 ccagtgttgagagcaggaaattatatcattaagaggtttctaaaggacgctcatgtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagtgttgagagcaggaaattatatcattaagaggtttctaaaggacgctcatgtgtgt 500
Query: 301 gtgtgcgtgtgtg----------ctatagcatgtatgtggaggtcagaggacaacttgt 349
||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgtgtgtgtgtgtgtgtgtgctatagcatgtatgtggaggtcagaggacaacttgt 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
