BAC Information

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BAC

Clone NameMSMg01-058B17
Chromosome4 (Build37)
Map Location 95,549,470 - 95,689,650
singlet/doubletdoublet
Overlap geneHook1
Upstream gene4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
Downstream geneCyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058B17.T7 (MSMg01no058_b17.b1)MSMg01-058B17.TJ (MSMg01no058_b17.g1)
ACCAG285100AG285101
length704706
length of high quality
(start - end)
311 (45 - 355)579 (74 - 652)
definitionCHROMAT_FILE: MSMg01no058_b17.b1 PHD_FILE: MSMg01no058_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:16 2005CHROMAT_FILE: MSMg01no058_b17.g1 PHD_FILE: MSMg01no058_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,549,470 - 95,549,774)(95,689,124 - 95,689,650)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTGCCTGATGACAGAACTGAGTGCTTTGGTGTGTAACACACGTA
AGTGACATGTGCAGTGTGCCCCACAGAGGACATGCTTGCTAGTCCATTGA
GCAATCATGGACATTCTCTATGGTACTCCCTGCTAGACCTTTCCCTGCTC
TCTGAAGTTCCAGGCATCTTCACCTTGGTCATATTTCAGCTCAACAGACC
TTTACCAATATTTCAGTCTACCAGGTAGCCTCAGGAGGTCTGGCATCACC
ATCATGTTTATTTTAAAATGAAGAAACCACCTCGGATCTCAGAGTCTAAG
GATTTTTTTATTTCCCCCCCCCCCCTTCCCAGGTCACATTGCCAGCAGCT
TTTTGAATAGTGGTTTTAGACAGAAAAATAGCATTTTAGGAGCATGTCAG
TTGCTATTCAAGGCAATATCCCAGGGCCAGCAAAGTGGCTTACCAGATAA
AGATGTCTGATGCCCAAGCCTCCCACCCTGAGCTGGGTCTCCTGATCCTA
AAGTAAATGTAAAAGTGAAGTAAATGGAGGAGGGAATCACCAACCATCCT
GAGTTATCCTCTGCCCTCCATGTGCACACAGACATGCACACTTACAAATG
CACACAGTAAGAACGATGAGATCGAGATGAACATATAAAATCTAAGAAGA
GATA
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTTGCACAGTTTTTCTCCACATGTG
TAACAGGAAACTTTTCCATAAAGCAAATCTAGATATTAAATGACAAACTA
CCCATTACTTTATGCAAATTAACTTGACCTGCTGTCACAACTAAAAACAT
AAAGTTGGAATATGCATTTGCTTTCCCTCACAGGATGCCATTTCAAGACA
AGTATTCGCTTCATCACACTTCCAACTACTCCAATGTCCTGCCCAGAGAC
AGAGCTGATACTGTGCTCTGCTTTCTAAGTAAGCTGAAAATATTAATTTG
ATATAATCTGACTTAAATATACTTGATTGTGAGGTTGAGAATGCAGCTCG
ATGAGCAGAGCTTCTGAGTTTGACCCCTAGAACTATACAAACCTGCCATG
TGGTCTACAACTACTTCCGTTAATCCCACCAGTGTGCAGAGACTGCAGGA
AGGACTGATCCGCTGTTCAAGGTCATCCTTGAACACACTGTGATTTCTAT
GCCAGTTCAGGATTATGAGACCCTGTCTCAAAGTGAAACCAAAATAAGAC
TAGCTGCTACCAAGCATCTTAACCTTTGTTTTCTATCTGGTAGTTTCTTG
GGGTACAGATATTCTGAGGCACTTCCGTTGTGTTTGCTTTGCAGACTAGC
CAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_b17.b1 MSMg01no058_b17.b1 CHROMAT_FILE:
MSMg01no058_b17.b1 PHD_FILE: MSMg01no058_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:16 2005
         (311 letters)



>mm_chr4_95549266_95549976
          Length = 711

 Score =  505 bits (261), Expect = e-147
 Identities = 294/305 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttgcctgatgacagaactgagtgctttggtgtgtaacacacgtaagtgacat 64
           |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcagttgcctgatgccagaactgtgtgctttggtgtgtaacacacataagtgacat 264

                                                                       
Query: 65  gtgcagtgtgccccacagaggacatgcttgctagtccattgagcaatcatggacattctc 124
           ||||||||||   |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 gtgcagtgtgtggcacacaggacatgcttgctagtccattgagcaatcatgggcattctc 324

                                                                       
Query: 125 tatggtactccctgctagacctttccctgctctctgaagttccaggcatcttcaccttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatggtactccctgctagacctttccctgctctctgaagttccaggcatcttcaccttgg 384

                                                                       
Query: 185 tcatatttcagctcaacagacctttaccaatatttcagtctaccaggtagcctcaggagg 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatatttcagctcagcagacctttaccaatatttcagtctaccaggtagcctcaggagg 444

                                                                       
Query: 245 tctggcatcaccatcatgtttattttaaaatgaagaaaccacctcggatctcagagtcta 304
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 445 tctggcatcaccatcatgtttattttaaaatgaagaaaccaccgcagatctcagagtcta 504

                
Query: 305 aggat 309
           |||||
Sbjct: 505 aggat 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no058_b17.g1 MSMg01no058_b17.g1 CHROMAT_FILE:
MSMg01no058_b17.g1 PHD_FILE: MSMg01no058_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:16 2005
         (579 letters)



>mm_chr4_95689124_95690102
          Length = 979

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttgcacagtttttctccacatgtgtaacaggaaacttttccataaagcaaatctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 accttgcacagtttttctccacatgtgtaacaggaaacttttccataaagcaaatctaga 468

                                                                       
Query: 61  tattaaatgacaaactacccattactttatgcaaattaacttgacctgctgtcacaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 467 tattaaatgacaaactacccattactttatgcaaattaacttgacttgctgttacaacta 408

                                                                       
Query: 121 aaaacataaagttggaatatgcatttgctttccctcacaggatgccatttcaagacaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaaacataaagttggaatatgcatttgctttccctcacaggatgccatttcaagacaagt 348

                                                                       
Query: 181 attcgcttcatcacacttccaactactccaatgtcctgcccagagacagagctgatactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 attcgcttcatcacacttccaactactccaatgtcctgcccagagacagagctgatactg 288

                                                                       
Query: 241 tgctctgctttctaagtaagctgaaaatattaatttgatataatctgacttaaatatact 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 287 tgctctgctttctaagtaagctgaaaatattaatttgatataatctgacttaaatatagt 228

                                                                       
Query: 301 tgattgtgaggttgagaatgcagctcgatgagcagagcttctgagtttgacccctagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tgattgtgaggttgagaatgcagctcgatgagcagagcttctgagtttgacccctagaac 168

                                                                       
Query: 361 tatacaaacctgccatgtggtctacaactacttccgttaatcccaccagtgtgcagagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 167 tatacaaacctgccatgtggtctacaactacttccgttaatcccaccagcgtgcagagac 108

                                                                       
Query: 421 tgcaggaaggactgatccgctgttcaaggtcatccttgaacacactgtgatttctatgcc 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 107 tgcaggaaggactgatccgctgttcaaggtcatccttgaacacactgtcatttctatgcc 48

                                                          
Query: 481 agttcaggattatgagaccctgtctcaaagtgaaaccaaaataagac 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  agttcaggattatgagaccctgtctcaaagtgaaaccaaaataagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)