CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGC
GGAATTCATCTTTACATAAAGTATATATTTAAGGGAGAGAGAGAAAAAGA
AACAGAGACAGAGAATCAAAAAATAGTGTGGGTCATATACATTATCTTCT
TTTTATTTTTTTCTTCTTTCTGTTTTTAGTAGTAATACTGGAGATTAAAC
TTGAGGTCTCACAGCTGGTTGGCAAGTACTCTATTGCTGAACTATGCCAT
TAACCCACATGTCTAGTTCATTTAGACCCAAGATGTTCCTAGAGCAGTAA
ATATGTGTGGAAATTTGATTGTATACATCTATTTGAGAAATGTTAGTAGT
ATAAAGATTGACATAGATTTGCACTTTCTTTACTCTTTTATTCCATCAAC
TGCATGTGGTTAATAGTATTTAGTAAATATTTGGTGGTGGGCGGTTGAAT
GCTAAATTGACTACAACTCTTACACACCTCTGTTTCTGAATTCTGACTCT
TTCCACCCAATTATACTTGTTTCAATTACTCTCATGCGTTCTATTTTTTG
CATCCCCTTGCCTTATTGTGTTTTACTATTTTAGCACTTTTTTCCTTCTA
ATCTGGTTTCTGGTTTGGTATTCCAATAGTATTCTGCTCCTTATATGACA
TCTTTCTATACTTGTTAATCTCATTTTATCGACCTATCATACCAAATCTC
AACTTTTATCCATGTACCCTCACTATTTATTCG

CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATTTCCCAGAGGAATTCCCATCTGCATTTGAAGAAGGGTA
CAGCTAACATTAAGCATATGACCCCTAATAACTCCATATGAAAATTCCTT
AGGAATCGTGAGGGAGCCAGCCTCATTATTCACAACTGGTATAATTAACA
ATCTGAATTAAGAGAATTGTCTGACAAAATCCTGAGAAAACATTTCACAA
GGATGAGTGACTTGTGCATTTTGCATGTTTGAAATCAAACAGAACACAAA
CTAGCTGAAGCTGTTTACATATATATATATATATATATATATATATATAT
ATATATATATTCTTTCTCGCCCAGCCTTTTGTTTCTGGTAATTTTTTTTC
TTTATTTTTATCTCATACAATACTTATAAACAGAAGACTCCCATTCCTCC
CCTCTTCCCAGACTGCTCTTCATTTCCCCTCTCTTCCAGTTCCATTGCTC
CTCCATTTTTCCTTCAGAAAAGAGCAGGCCTCTCACGGATATCTATTATT
ATAAGGTTTCTACTGGGTATCCCATAGATTATTTCATAATCTCCCCCATA
TAAAGGTTTAGTTGCAAGCCTATATTGTTTTAAGACAAAATTATCCTATG
TATTCAGTAAAAACTACTCTAGATATTCTCTCTACTCTTCTCATGTTTAT
GAAGTATAGGCAATATCCTACATATTTATTA

Query= MSMg01no058_c10.b1 MSMg01no058_c10.b1 CHROMAT_FILE:
MSMg01no058_c10.b1 PHD_FILE: MSMg01no058_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:20 2005
         (249 letters)



>mm_chr4_72309916_72310564
          Length = 649

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatatatttaagggagagagagaaaaagaaacagagacagagaatcaaaaaatagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatatatttaagggagagagagaaaaagaaacagagacagagaatcaaaaaatagtgtg 260

                                                                       
Query: 61  ggtcatatacattatcttctttttatttttttcttctttctgtttttagtagtaatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcatatacattatcttctttttatttttttcttctttctgtttttagtagtaatactg 320

                                                                       
Query: 121 gagattaaacttgaggtctcacagctggttggcaagtactctattgctgaactatgccat 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gagattaaacttgaggtctcacagctggttggaaagtactctattgctgaactatgccat 380

                                                                       
Query: 181 taacccacatgtctagttcatttagacccaagatgttcctagagcagtaaatatgtgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacccacatgtctagttcatttagacccaagatgttcctagagcagtaaatatgtgtgg 440

                   
Query: 241 aaatttga 248
           ||||||||
Sbjct: 441 aaatttga 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no058_c10.g1 MSMg01no058_c10.g1 CHROMAT_FILE:
MSMg01no058_c10.g1 PHD_FILE: MSMg01no058_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:20 2005
         (181 letters)



>mm_chr4_72412878_72413458
          Length = 581

 Score =  342 bits (177), Expect = 6e-99
 Identities = 180/181 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataactccatatgaaaattccttaggaatcgtgagggagccagcctcattattcacaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataactccatatgaaaattccttaggaatcgtgagggagccagcctcattattcacaact 322

                                                                       
Query: 61  ggtataattaacaatctgaattaagagaattgtctgacaaaatcctgagaaaacatttca 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtataattaacaatctgaatcaagagaattgtctgacaaaatcctgagaaaacatttca 262

                                                                       
Query: 121 caaggatgagtgacttgtgcattttgcatgtttgaaatcaaacagaacacaaactagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggatgagtgacttgtgcattttgcatgtttgaaatcaaacagaacacaaactagctg 202

            
Query: 181 a 181
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)