BAC Information

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BAC

Clone NameMSMg01-058K22
Chromosome4 (Build37)
Map Location 32,945,450 - 32,945,691
singlet/doubletsinglet
Overlap geneAnkrd6
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2
Downstream geneLOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058K22.T7 (MSMg01no058_k22.b1)MSMg01-058K22.TJ (MSMg01no058_k22.g1)
ACCAG285539AG285540
length713708
length of high quality
(start - end)
---242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no058_k22.b1 PHD_FILE: MSMg01no058_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:59 2005CHROMAT_FILE: MSMg01no058_k22.g1 PHD_FILE: MSMg01no058_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAAAATTGCGGCGAAAAAAGAANANNATTTCCGAGCCGACGGNGGA
ANNNANGNCTTACCCCAACCGGGGGNNGGNNNNNAAANGACANGNNCCAC
CGACGCCGCAAGNAGAACCCCCGGAGAGGAACAGGACCACAAAAAAAAAG
CACAAAACGACAAACCGGAGACACCGCCCCACCACGAAGCAAGGACAAGC
CAGGAACCAGCAGCAAGAAAAAGAGAACCACCACGCCAAACCGCCACCAG
ATTTTGACCCAGAGGGACAGGAACCGAGACACCACCACAAACCACGAGCA
CAGCACACACAAACGTATTTTTTTTTTCGAACACCCCAACACGCCAACAG
ACAAAAAAAATTTTATCCCCCCGCCGCATTTTATGAGTTTTTGACAAAGA
GTTTGAAAGATTGCTCTAAACAGATACTTGAAATATCATCTGCATGATAA
GAAATGGCAATAAAATATGCAAGAAGCTGATATGATATGATGCAACTTTG
AAAGAAAGTATTTTTGAGCAGCGCCAAACACAGGAAAGAATATAAACCAA
CTTGAAATGTAATGGCCCGAATTATATAGGAAAGGATATACAACGAAGGC
TCCTAGCAAATTCATTAACTACACAACATAGAATATATATATAGTTGGCT
AACTATCTTCATTTCCATTTTTTATTTCTTTTTATTTGTATTCACAGTGG
AGAACTTTCCAAC
CCAAATGCTXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAACATGTTGGG
TGAACTATAGAATTTACAACAAAATTCACCAGGACCCATCCATGTTTGTG
CCCTCATCTTGGACTTCCTTGGCCCCGATGCATTTCTGATGTGGCTGCCT
GAGCAAACCAATGTAGTCTCGTCCTGGAAAAGGTTATCTATCCAGTCAAC
CTCACCCCAGCTCTCAGTGATCATCGACCTCCTGTTTGTTTATGAGTTTT
CCTTTTTTAGATATTACAAAGAAATGGAATTATGGGGTGACCTGGTTAAT
TTTATGCCAACTTGACACAAGCTATTTTTCTTCATAGGAGGGAGGCTTTA
TTGAGAAAATGCTTCCTTAATACCGGCTATGGGGGGCTGGTGAGATGGCT
CAGTGGGTAAGAGCACCCGATTGCTTTTTCGAAAGTCTGAAGTTCAAATC
CCAGCTACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGACTCCC
TCTTCTGAAGTGTCTGAAAACAGCTACAGTGTACTTACATGTAATATATA
AATAATTATATAATTCTTTTATAATAAGATGGGCTATGGTGTAATAAAAT
GTACGACATTTCTCTCTTTTTTTTTTTCCTTTCTTCCCTTTCATATACCT
ACCCTTTCTCTTTCCCCGAAAACAGGGGTTCCTCTGTTGTAAACCCTTGG
TTTGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_k22.g1 MSMg01no058_k22.g1 CHROMAT_FILE:
MSMg01no058_k22.g1 PHD_FILE: MSMg01no058_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:59 2005
         (242 letters)



>mm_chr4_32945386_32946027
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/246 (96%), Gaps = 8/246 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacccatccatgtttgtgccctcatcttggacttccttgg----ccccgatgcattt 56
           |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 306 caggacccatccatgtttgtgccctcatcttggacttccttggggaa----gatgcattt 251

                                                                       
Query: 57  ctgatgtggctgcctgagcaaaccaatgtagtctcgtcctggaaaaggttatctatccag 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgatgtggctgcctgagcaaaccaatgtagtctcgtcctggaaaaggttatctatccag 191

                                                                       
Query: 117 tcaacctcaccccagctctcagtgatcatcgacctcctgtttgtttatgagttttccttt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcaacctcaccccagctctcagtgatcatcgacctcctgtttgtttatgagttttccttt 131

                                                                       
Query: 177 tttagatattacaaagaaatggaattatggggtgacctggttaattttatgccaacttga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tttagatattacaaagaaatggaattatggggtgacctggttaattttatgccaacttga 71

                 
Query: 237 cacaag 242
           ||||||
Sbjct: 70  cacaag 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)