BAC Information

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BAC

Clone NameMSMg01-058M06
Chromosome4 (Build37)
Map Location 97,679,601 - 97,679,735
singlet/doubletsinglet
Overlap geneNfia
Upstream geneLOC620883, EG638698
Downstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058M06.T7 (MSMg01no058_m06.b1)MSMg01-058M06.TJ (MSMg01no058_m06.g1)
ACCAG285602AG285603
length711718
length of high quality
(start - end)
187 (138 - 324)138 (73 - 210)
definitionCHROMAT_FILE: MSMg01no058_m06.b1 PHD_FILE: MSMg01no058_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:06 2005CHROMAT_FILE: MSMg01no058_m06.g1 PHD_FILE: MSMg01no058_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAGAGGATCCG
NGGAATTCAGAATTTTCTCGTAGAACAGGCATAGGCTTGAGTCAGTGTCT
CCTGACATGTAAAATTGGTGGTCTGCCTTAATGGTCAGAATTGGAGTAGA
ACTGGTTGAAGTCTACCTAGTGCCACTATAAAGTTCCCAAATCCACTCCT
TCTTTTAGCATTTACTGAGTGCCTACTCAGTGGCTCAAAGCATTTTGAGT
GCTCAAAACGAAAAGGTGAGGTGTTCATTTTCCGCTCCCATGTGTAATTG
AGCATCTCTCCATTTTCCTACCTTCTTATTGTCTGCCCAGCCAATAGTCC
ATATGACTGTGGGTATTCCATCCACTCTGAGATTCTCAGCCAAGGCTATA
ATCAAGGACTGGGGGCTTAAAATTGTTTTTGTTCTTCATTCAACAACCAG
TGGTTTTTGTTATACACCCCATACCACTCGTGATGATCAATAATTGTTGT
GTGCAATTTTATACTATTGTCTTTACTCCAAACTGGCCTCCATTGCTGCG
TGCTGACATCTCCTGCCTATAAAACACTGACCTTTTCAATTTATTATTTT
GTGCCTCTTCCCTTGTCTTAAACTTTTGTTGCTAGTCCCAACTATGCCCC
TGTCAAAACCTCCTTGGCCCCCTGGATCATAAAAAAGGCTTAATGGCCCC
CACCTTCTTGC
CGAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAAAGCTAGGTGA
ACTATAGATTTTCCTGCGCAATTCCTCCTTTCTTCCCAGTTGCCTGTCCT
TTCAGCATCCTCTGCAGGACCCTTTTCTCAGGCCCTTTTACTCCTTGAGC
CTCCTCTTCTCAGACCAGTTTCTGAAGGCTTCCCTGCTCCCTGACCCTTA
GTCTTCCCGATTCCCCTGGAATGTGTTTGTAGGTGATGGCTGTGTCTCTG
GTCTACCTCCCTTCTTCTTGGTAATAGACGTGCCACCAAATCATTCTGTG
AGTAAAATCTGGACTCATATTGTTCCTCGTTATCTTTTCTCCTGATAGAT
ATTAGTGTATTGGAAATCTCCATCTATTGCTGATTGGCTTAATATATACT
GAACATACTAGTGCACACAACTACTGTTCTGCTTTTACATATTTCATAAA
GACAACCTTAACTGGCAGTCTCACCATAGAATTTATACTTTTGAAAGATG
ATGACCAGATTCTTATTAACTCATTTAACACTAATTACTACGCTACTGTA
AATAAGGTTTCCATCAGCCTGTAATACTTACATATCCTTATAACTACTCT
CTCTTAATGACGCCCCTTTTGTATGCACTATGGTTTATGGACTTTGATTC
CATACTCTCGGCCAAATTCTTTCTCTAACGGACTATTATATTCTTCTCTT
CTCAATTTCTTGTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_m06.g1 MSMg01no058_m06.g1 CHROMAT_FILE:
MSMg01no058_m06.g1 PHD_FILE: MSMg01no058_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:06 2005
         (138 letters)



>mm_chr4_97679401_97679938
          Length = 538

 Score =  211 bits (109), Expect = 2e-59
 Identities = 130/137 (94%), Gaps = 4/137 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcctttcttcccagttgcctgtcctttcagcatcctctgc-agg-acccttttctca 58
           ||||||||||||||||||||||||||||||||||||||||| | ||| ||  ||||||||
Sbjct: 201 tcctcctttcttcccagttgcctgtcctttcagcatcctct-cgaggtaca-ttttctca 258

                                                                       
Query: 59  ggcccttttactccttgagcctcctcttctcagaccagtttctgaaggcttccctgctcc 118
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 259 ggcccttttactccttgagcctcctcttctcagaccagtttttgaaggcttccctgctcc 318

                            
Query: 119 ctgacccttagtcttcc 135
           ||||||||| |||||||
Sbjct: 319 ctgaccctttgtcttcc 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)