BAC Information

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BAC

Clone NameMSMg01-058M15
Chromosome4 (Build37)
Map Location 29,572,147 - 29,572,390
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058M15.T7 (MSMg01no058_m15.b1)MSMg01-058M15.TJ (MSMg01no058_m15.g1)
ACCAG285620AG285621
length703712
length of high quality
(start - end)
529 (37 - 565)240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no058_m15.b1 PHD_FILE: MSMg01no058_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005CHROMAT_FILE: MSMg01no058_m15.g1 PHD_FILE: MSMg01no058_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTATACGACTCCTATTTCAAGAAGAGGGCGGAATTCATATAT
GTGCCGATTTATTTCTTGGTCTTCCCTGTTATTCCATTGATTAAGCTATC
CAATTTTACACTCACATTTTCTGGTTTCTATTGGTATGTATAGCTATGTT
GTATAACTTTTAATCTGAGGTGGTGATATCTACAGAATTTTTTCTTTTTA
AATTTATTTTATTTTATTTTTGGCTACCATTAAGGTGTTTTGTGCTTCCA
TGTAAAACTCAAATTTGTTTATTTTGTGTTAGAATTTTAATGAGAATTGA
ATTGAATTATTTAATTCTTTGGTAGGATGGTCGTTTTCAATATATTAATG
TACCAAGCCATGAGCATGGAATATATTTCCTGTTTCTGATATATTCGTCA
ATGTTTTAAAGTTATGCTCATAGAAATGTTTCACTTGCTCAGTTAAAATG
ACACCAAGTTTTGTGAAAGAAATTCTCTGATTTTTTCCCCTCAGTGTGTG
TGTAATTTATATATAAAAATTCCACTGATTTTATTTTGTATTTAGTATCT
TGATACATTGCTGATATAATAAAGTAATATCTGTCAACCAAGATACTTTG
ATTTCTTCTTTTCTGTTTATATCTCCTTGATCTCCTTCAGTTGTTCTGTT
GTTCTCACTAAGACTTCATGATTTATCCTTGACAAGCTTGTATAAAGCCT
ACT
NAAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCAGGGGTGGAATGTAAAGCC
CCTCCGGAGTTCCCATAGAGCTGTCTGGGTTAACAGCAGGGTGCCTCAGG
AGGGTTCCAGATCACAATAATAACTAGCATTGGGTAGCATACAGATGTAC
AGTTCTATGCACATTCATTTCTTCTTCTGTTATGAACTTTAAATATTCAT
GGTTTAGATAAACTTTGAAATATAACTTAATTAGAAACACTTCAATCTAT
GCTTGGTATAAGATTGTTGACTTGAAGCCAATGTTGGGATAACATTGATC
CTTAAAACTTGCTGAAAGTCTTTAAATTCTGGGGGAAGTGGATGGGCCTT
CTGATGCCCAGCCAGTCTTGTGAGAACAGTGTCGCTTTAAATAAGGAAAT
GTCAAATCATGCTCCTATGAGAAACAGCTGTGGAGATCCACAGTGTTAGT
TTGGCATAGTCTGCTAAGTAAGTAGTACAGCTATAACTCAACCGTGTGCA
GTCTTAGCGAAGCAAAGACTTCTTTATGAGGAAATAAGCCAGTTCTTGTT
TTCGCGTTGTAGCTCCTGCCTTGAGAAAACAAGGCTAAGAACCCTAGATT
ATTGGGTGAAGATTGATACATTTATTTAAAATATCATTTATAAAAAGAAG
GAGTCAGCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_m15.g1 MSMg01no058_m15.g1 CHROMAT_FILE:
MSMg01no058_m15.g1 PHD_FILE: MSMg01no058_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:08 2005
         (240 letters)



>mm_chr4_29571947_29572590
          Length = 644

 Score =  429 bits (222), Expect = e-125
 Identities = 237/244 (97%), Gaps = 4/244 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcaggggtggaatgtaaagcccctccg----gagttcccatagagctgtctgggtta 56
           |||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||
Sbjct: 201 tttgcaggggtggaatgtaaagcccctcagtagggagttcccatagagctgtctgggtta 260

                                                                       
Query: 57  acagcagggtgcctcaggagggttccagatcacaataataactagcattgggtagcatac 116
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 acagcagggtgcctcaggagggttccagatcacaatagtaactagcattgggtagcatac 320

                                                                       
Query: 117 agatgtacagttctatgcacattcatttcttcttctgttatgaactttaaatattcatgg 176
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 agatgtacagttctatgcacattcatttcttcctctgttatgaactttaaatattcatgg 380

                                                                       
Query: 177 tttagataaactttgaaatataacttaattagaaacacttcaatctatgcttggtataag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagataaactttgaaatataacttaattagaaacacttcaatctatgcttggtataag 440

               
Query: 237 attg 240
           ||||
Sbjct: 441 attg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 644
Length adjustment: 9
Effective length of query: 231
Effective length of database: 635
Effective search space:   146685
Effective search space used:   146685
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)