Query= MSMg01no058_n21.b1 MSMg01no058_n21.b1 CHROMAT_FILE:
MSMg01no058_n21.b1 PHD_FILE: MSMg01no058_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:14 2005
(289 letters)
>mm_chr4_28275015_28275702
Length = 688
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 1 cctagagtctcaagagtacaaatgtaataaaagaccataagtagtgacattccgctgagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cctagagtctcaagagtacaaatgtaataaaagaccataagtagtgacattctgctgagt 260
Query: 61 ggattgatgctggactgagcaagattggagtagaatcatggcaggcatgcatggaaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattgatgctggactgagcaagattggagtagaatcatggcaggcatgcatggaaaaag 320
Query: 121 tcatgtgttttcaaacatcccattagcacataaagctaatgtctttgatataaatatttc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgtgtttt-aaacatcccattagcacataaagctaatgtctttgatataaatatttc 379
Query: 181 cagtgctaaaaattcttggtataaatctccccactctaagcatgtagcagggcataagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagtgctaaaaattcttggtataaatctccccactctaagcatgtagcagggcataagca 439
Query: 241 aagagatgctttctggtgactacattttctattttggggtatcatattg 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagagatgctttctggtgactacattttctattttggggtatcatattg 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_n21.g1 MSMg01no058_n21.g1 CHROMAT_FILE:
MSMg01no058_n21.g1 PHD_FILE: MSMg01no058_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:14 2005
(226 letters)
>mm_chr4_28423434_28424059
Length = 626
Score = 335 bits (173), Expect = 2e-96
Identities = 212/227 (93%), Gaps = 6/227 (2%)
Strand = Plus / Minus
Query: 1 atagagctctaagtgtctcaatatcctgagtgttgggtttaatgtcaggtatcaccatgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 362 atagagctctaagtgtctcaatatcctgagtgttgggtttaatgtcaggtataactatgc 303
Query: 61 tcagcttgataaggtttggactttcagagagaaaaggaaatgtaaaaaagtcatctctat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcagcttgataaggtttgaactttcagagagaaaaggaaatgtaaaaaagtcatctctat 243
Query: 121 ataagcctaccccccaaaatactttgaaaacattaaaaattttgtgtgtgtgtgtgtgtg 180
|| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||
Sbjct: 242 atgagcctaccccccaaaatactttgaaaacattaaaaatttagtgtgcgtgcgtgcgtg 183
Query: 181 tgtg--tg--tg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 221
||| || || |||||||||||||||||||||||||||||||||
Sbjct: 182 cgtgcatgcatgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space: 133889
Effective search space used: 133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
