BAC Information

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BAC

Clone NameMSMg01-059H18
Chromosome4 (Build37)
Map Location 14,286,298 - 14,286,642
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H18.T7 (MSMg01no059_h18.b1)MSMg01-059H18.TJ (MSMg01no059_h18.g1)
ACCAG286151AG286152
length698693
length of high quality
(start - end)		550 (45 - 594)545 (71 - 615)
definitionCHROMAT_FILE: MSMg01no059_h18.b1 PHD_FILE: MSMg01no059_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:00 2005CHROMAT_FILE: MSMg01no059_h18.g1 PHD_FILE: MSMg01no059_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATGCGCGGAA
TTCTCACCTGTTGCTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATCGCAAATCAAAACAACACTGAGATTCC
ATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATATAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACTATATGTACTCACTGATAAGTGGATATTAGCCCCATACCTAA
GATACCCAAGATATAGGATACCATTTGCTAATCACATGAAACTCAAGT

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCCACACTGCTGGCAAGGACTTCTATTA
GATTACAGGACAGGGGGCTTCTTTTTACCATCTCATGTTCTTCAAAATTT
CCCTGCCATTTTTGTCCTGCCTTAGCAAATTTCTCTAAAATCTACATACT
CCCAACGGACACAGATAGCTAAGGACAATCTTAAACTTTCGATTCTGCTA
CATCCCTTACCTAAGTCCTGGGATTATGGGCAGCAGCCATCCTTCCCAGT
TTATATCGTAGCAAGCATCCAATGCAGAAATCTGGGCCTGCTAGACTTGC
ATTCTACCAACTGATTTCCACCCCGCAGATCTTGTCATCACTACTATTAA
CCTGAATATTCAAACAGCTTTATTATGTATATTTGGTTGCCTCCTTTATT
ATTATTTTTATTAGATATTTTCTTTACATTTCAAATGGTGTCCCCTTTCC
TAGTTTCCCCTGAAAATCCCCTGTCCTCTCCCCCTTTCCCCCTGCTTCTC
AACCCACACACTCCCACTTCCTGGCCCAGGCATTCCCCTATACTGGGGCA
TAGAACCTTCACAGGACCAAGGGGTGCCTCCTTTATTTATTTTGATTTTG
GTAAAGATGGTTCAATTGCTAAGGGCTCTGGATGTGATCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h18.g1 MSMg01no059_h18.g1 CHROMAT_FILE:
MSMg01no059_h18.g1 PHD_FILE: MSMg01no059_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:00 2005
         (545 letters)



>mm_chr4_14286298_14287242
          Length = 945

 Score =  667 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccacactgctggcaaggacttctattagattacaggacagggggcttctttttacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttccacactgctggcaaggacttctattagattacaggacagggggcttctttttacca 286

                                                                       
Query: 61  tctcatgttcttcaaaatttccctgccatttttgtcctgccttagcaaatttctctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctcatgttcttcaaaatttccctgccatttttgtcctgccttagcaaatttctctaaaa 226

                                                                       
Query: 121 tctacatactcccaacggacacagatagctaaggacaatcttaaactttcgattctgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctacatactcccaacggacacagatagctaaggacaatcttaaactttcgattctgcta 166

                                                                       
Query: 181 catcccttacctaagtcctgggattatgggcagcagccatccttcccagtttatatcgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 catcccttacctaagtcctgggattatgggcagcagccatccttcccagtttatatcgta 106

                                                                       
Query: 241 gcaagcatccaatgcagaaatctgggcctgctagacttgcattctaccaactgatttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gcaagcatccaatgcagaaatctgggcctgctagacttgcattctaccaactgatttcca 46

                                                        
Query: 301 ccccgcagatcttgtcatcactactattaacctgaatattcaaac 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ccccgcagatcttgtcatcactactattaacctgaatattcaaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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