Query= MSMg01no059_k02.b1 MSMg01no059_k02.b1 CHROMAT_FILE:
MSMg01no059_k02.b1 PHD_FILE: MSMg01no059_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:11 2005
(654 letters)
>mm_chr4_36243758_36244811
Length = 1054
Score = 1220 bits (631), Expect = 0.0
Identities = 646/651 (99%)
Strand = Plus / Plus
Query: 4 ggaattcttcatcctgcatcttttatgtagaactcatccttcttaaatagatgttgaagt 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcatcctgcattttttatgtagaactcatccttcttaaatagatgttgaagt 263
Query: 64 gggctagggaaatggctcaatgggtagagctcttgttgtgcaaggatgtgttcctgagtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggctagggaaatggctcaatgggtagagctcttgttgtgcaaggatgtgttcctgagtt 323
Query: 124 tagatccccagcacctatgcaaaaatctgagcatgggagaacacctctgtggtgtcactt 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 tagatccccagcacctatgcaaaaatctgagcatgggagaacacctctgtggtgccactt 383
Query: 184 ctgtacaatgaaggaaccagagctgaacttagcttgtagtctccatatgcatgagaacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtacaatgaaggaaccagagctgaacttagcttgtagtctccatatgcatgagaacat 443
Query: 244 actcacaagcacaacattttgctcatgtgcacacattggcagtaaataacatgcacaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actcacaagcacaacattttgctcatgtgcacacattggcagtaaataacatgcacaata 503
Query: 304 tgtcacacacacccatatacatacaatgacatcacccacccacccctcccccacacacac 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 504 tgtcacacacacccatatacatacaatgacatcacccacccacccctcccccccccacac 563
Query: 364 ttttaaaaactaatttttaaatttaatgtacattgtggtggatgtcattttggcattctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttaaaaactaatttttaaatttaatgtacattgtggtggatgtcattttggcattctt 623
Query: 424 gtgcatgaacattatgctgttttattcttgctaattcctcaacatcacacatttctaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgcatgaacattatgctgttttattcttgctaattcctcaacatcacacatttctaatg 683
Query: 484 actttattgcctcatgtcccttgatgtccaatctgctgtagcagcgaaaatggctccaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actttattgcctcatgtcccttgatgtccaatctgctgtagcagcgaaaatggctccaat 743
Query: 544 tttgaccaaaggggttgccctgtcagcaatttcagtctgttaaaacattccaagaattcc 603
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttgtccaaaggggttgccctgtcagcaatttcagtctgttaaaacattccaagaattcc 803
Query: 604 aggaaagttaaacacctgaggtgttatctcacatctgcagaagtgcaactg 654
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aggaaagttaaacacctgaggtgttatctcacatctgcagaagtgcaactg 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_k02.g1 MSMg01no059_k02.g1 CHROMAT_FILE:
MSMg01no059_k02.g1 PHD_FILE: MSMg01no059_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:11 2005
(635 letters)
>mm_chr4_36337638_36338673
Length = 1036
Score = 1170 bits (605), Expect = 0.0
Identities = 628/636 (98%), Gaps = 1/636 (0%)
Strand = Plus / Minus
Query: 1 tgtggatagtagagaagtgacaagattactactggtcagaatgttatcgctgtaagggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tgtggatagtagagaagtgacaagattactactggtcagaatgttatcgctgtaagggca 777
Query: 61 gctaggtcctgatgggtatgaagaatgtcagagcatgagagtggctggatcttggataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gctaggtcctgatgggtatgaagaatgtcagagcatgagagtggctggatcttggataat 717
Query: 121 cgtgagactggatgcctagtaaagggattgaaatgttcaaatcatgatgctgagtcttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cgtgagactggatgcctagtaaagggattgaaatgttcaaatcatgatgctgagtcttgg 657
Query: 181 gaaagtcatgagaaggatagagtgacttcctgtacattttatacaggagcactggatgct 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 656 gaaagtcatgagaaggatagagtgacttcctgtaccttttatacaggagcactggatgct 597
Query: 241 tggtattgaagggatggtacaagtgaaagtgcgttcggtgattctgtctctgtgctgggt 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 596 tggtattgaagggatggtacaagtgaaagttcgttcggtgattctgtctctgtgctgggt 537
Query: 301 gtttcacttgcatatcaatgacagaaagttgcaaacagaaaaaatgatttatttaaaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtttcacttgcatatcaatgacagaaagttgcaaacagaaaaaatgatttatttaaaatc 477
Query: 361 gttagtgactgaatttctgtagagagactaaaacaaatcaaagatgggatacatttgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gttagtgactgaatttctgtagagagactaaaacaaatcaaagatgggatacatttgagg 417
Query: 421 tataactgctggtttagccctcttttcagcttatagggtgactagaaatggaccacattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tataactgctggtttagccctcttttcagcttatagggtgactagaaatggaccacattg 357
Query: 481 tgagcaaagacacaagaaaaccagtacttttgacaaggttagtcagactttagttctaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgagcaaagacacaagaaaaccagtacttttgacaaggttagtcagactttagttctaaa 297
Query: 541 gcttanaggcaatttgatctcataaccaagcctttattttgatactcccatgtgaatttg 600
||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 296 gcttaaaggcaatttgatctcataaccaagcctgtattttaatactcccatgtgaatttg 237
Query: 601 c-actagttcccagctcttgctcaaagtctcccaat 635
| ||||||||||||||||||||||||||||||||||
Sbjct: 236 ccactagttcccagctcttgctcaaagtctcccaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space: 641250
Effective search space used: 641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
