Query= MSMg01no059_l02.b1 MSMg01no059_l02.b1 CHROMAT_FILE:
MSMg01no059_l02.b1 PHD_FILE: MSMg01no059_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:15 2005
(621 letters)
>mm_chr4_7939475_7940495
Length = 1021
Score = 578 bits (299), Expect = e-169
Identities = 302/303 (99%)
Strand = Plus / Minus
Query: 319 gaagcatagaggacaccaactagattgagccataaaagaaagtgccctcagcatgtaata 378
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1021 gaagcatagaggacaccaactagattgagccataaaagaaagtgccctcagcatctaata 962
Query: 379 tttatacagaacaaagaaagaatattaaaaactgcaagaaaaataaaagaccaagtaaat 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tttatacagaacaaagaaagaatattaaaaactgcaagaaaaataaaagaccaagtaaat 902
Query: 439 ataaaggcagaccttttagaattataccttactttccaatggagaatctaaaagccagaa 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ataaaggcagaccttttagaattataccttactttccaatggagaatctaaaagccagaa 842
Query: 499 gggcttgtacagatggttctcatggtggagaaaagagcagaaggagatagcaggacaaaa 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gggcttgtacagatggttctcatggtggagaaaagagcagaaggagatagcaggacaaaa 782
Query: 559 tagagtcaggggtagagctatttccaaagatcagctgcttggagaaagttgatttgctga 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tagagtcaggggtagagctatttccaaagatcagctgcttggagaaagttgatttgctga 722
Query: 619 ggt 621
|||
Sbjct: 721 ggt 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_l02.g1 MSMg01no059_l02.g1 CHROMAT_FILE:
MSMg01no059_l02.g1 PHD_FILE: MSMg01no059_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:15 2005
(547 letters)
>mm_chr4_7904434_7905385
Length = 952
Score = 1013 bits (524), Expect = 0.0
Identities = 543/552 (98%), Gaps = 5/552 (0%)
Strand = Plus / Plus
Query: 1 aaactgtaatatctgaaaaatgagaaccatatttacactaccatttcattttctctaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactgtaatatctgaaaaatgagaaccatatttacactaccatttcattttctctaaga 260
Query: 61 aatgaagtgagctgtattttatttcattctgttcaccacatgatgaacgttagtttccaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aatgaagtgagctgtattttatttcattctgttcaccatatgatgaacgttagtttccaa 320
Query: 121 atatttgcctactaaatagtaaaggatcattttagacgttatactaattccaaattgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttgcctactaaatagtaaaggatcattttagacgttatactaattccaaattgatc 380
Query: 181 tgtggctatggctggcataggtacatccatttatataaactgtagtttctttacctatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtggctatggctggcataggtacatccatttatataaactgtagtttctttacctatgg 440
Query: 241 tccaaatactataagatttgagataggacgtaagataaatggctagcatgccagcaacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaaatactataagatttgagataggacgtaagataaatggctagcatgccagcaacct 500
Query: 301 gaacaagaatacaataattaagctgcaagactgactggtgccctctcacccacttccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacaagaatacaataattaagctgcaagactgactggtgccctctcacccacttccttt 560
Query: 361 ctgacagaagtccagtagcgccccatgcagttaacttcctctc-----gtggttgttgca 415
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ctgacagaagtctagtagcgccccatgcagttaacttcctctcctctcgtggttgttgca 620
Query: 416 gtgggatggagatcccatgtcattcataacaaaagcttcactggggaaaacagaacatcc 475
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgggatggagatcgcatgtcattcataacaaaagcttcactggggaaaacagaacatcc 680
Query: 476 cagcaattgttaacacagagtgtttaaaacaaaacacagttaacactatttttgtctaat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcaattgttaacacagagtgtttaaaacaaaacacagttaacactatttttgtctaat 740
Query: 536 aaaattctacct 547
||||||||||||
Sbjct: 741 aaaattctacct 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 952
Length adjustment: 10
Effective length of query: 537
Effective length of database: 942
Effective search space: 505854
Effective search space used: 505854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
