BAC Information

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BAC

Clone NameMSMg01-059N13
Chromosome4 (Build37)
Map Location 125,582,078 - 125,714,937
singlet/doubletdoublet
Overlap geneCsf3r
Upstream geneCdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneMrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059N13.T7 (MSMg01no059_n13.b1)MSMg01-059N13.TJ (MSMg01no059_n13.g1)
ACCAG286429AG286430
length751712
length of high quality
(start - end)
219 (64 - 282)320 (70 - 389)
definitionCHROMAT_FILE: MSMg01no059_n13.b1 PHD_FILE: MSMg01no059_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:27 2005CHROMAT_FILE: MSMg01no059_n13.g1 PHD_FILE: MSMg01no059_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(125,582,078 - 125,582,296)(125,714,618 - 125,714,937)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCTAATGCGAGAAGAGCGCGGAATTC
AATGAGATTCTTCCCAAACAACGGTCTCAGCTGCTTGATGAGGGGCCATT
GTCTCCTCTCTGGGTGTGAGCACTTCCAGCCCTGGAAAGCATGAAGAAAG
CACGGCAATGCTAGGTCAGAGGAAGACCACAGAGCGTTTGTGAATGCGGT
GGGGGCTGGGGGGCCTTACTGCGTGTCTGTCTCTCTAAGTATGTGCATTT
ATGGAGGGTTGGAGAGATGTGGTGTGTGTGTGTGCTTTCCACTTTATTAT
TTTCTTTTTTATTTTTTTTTTTCTTCTTTCTCCTCCTTCCTCTTCGTTCT
CTATTCTAATTTCTCTCCCTTCTTTTTCGTTTCTTCTTCTTTTTTTTTTT
CTTTTGCTTCTTCCTCCTCCTTTTTTCTTCCTCTTTCTCCCTCTCCTATT
TGCCCTCGTTTATCTCTTCTTTTTCCTCCCTATTTGCTTTTTTTCCATTT
CTATTTCTCCTACTCTCCCTTCTACCTTTACTTCTATATTACTTCTTCCT
TCTTTCCTATTTTTCTTTTATTTCATTATTTTTTCCTCTTCCCACTTTCT
CCATTTTTACCTCTTTTTCCTTACTTTCCTCCTCCAATCCTCCTCTTTTT
TTCTTCTCTATTTTTCCTTTAATTTACATTCTCTAGTGATTACTTTTTTT
ATGCTCCCTAATTACTCTTCGCCCTCATCCGTCTCCTTTCACCTTTCGCC
T
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCAGAAATTCCAGTGATGTTCCCGTTAGGTTCTATCATCCA
GGACTTATAGCTGTTATTGTAGCTGGGAGAACTCATTTCCCACTCAATGA
GATAGCCCTGAGGCAGAAGGCTGGGGGCTTCCCAGTCTACCCAGATGGTG
TTAAGATCTTGGGCCATGGCATGGAGTCCGGTCACAGCTGGACCTGGAGG
TAAAGCAGGGAATAGGAGTGAAGACGAAAAGTACGCAGGCCTCAGTAGCA
GACACTTGGATCCAAACCTTGCCTTTGCTGCCGACAGACCTGTGATCCAG
GGTATGTCAATACCTGATCACCAAGCTCCACATCTGTAAAGGGGAAGTGA
CAACAAAAAAATTCCTGCTTTGTAGAGGCTTGTGTGTTAAAGGAAGGTGC
GCAGAATAAGCCTAGTACAGAGCCCGGCACCATTTAGCTTAATATATGTG
ATTCACCGAGTTCTTCAATAGTCATACCAGGGAGTTTTCTATAGCTGTCT
CCCTTTTTTTCTTCTTTCTTTTGCGGACTTTTTGACACCGCCTTATCTTG
CCCCCATCCTGGCTGTCCCTCGCCCCTTCTCTTGATTTTCTTTCCCTTCC
CTCATTTCCCAATTTCTTTTTCTATTTTGCCTTTTCCCAGGTTTGCCATT
ACCTTCTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_n13.b1 MSMg01no059_n13.b1 CHROMAT_FILE:
MSMg01no059_n13.b1 PHD_FILE: MSMg01no059_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:27 2005
         (219 letters)



>mm_chr4_125581878_125582496
          Length = 619

 Score =  385 bits (199), Expect = e-111
 Identities = 214/219 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaacaacggtctcagctgcttgatgaggggccattgtctcctctctgggtgtgagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaacaacggtctcagctgcttgatgaggggccattgtctcctctctgggtgtgagcac 260

                                                                       
Query: 61  ttccagccctggaaagcatgaagaaagcacggcaatgctaggtcagaggaagaccacaga 120
           |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttcccgccctggaaagcatgaagacagcacggcgatgctaggtcagaggaagaccacaga 320

                                                                       
Query: 121 gcgtttgtgaatgcggtgggggctggggggccttactgcgtgtctgtctctctaagtatg 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gcgtttgtgaatgcggtgggagctggggggccttactgcgtgtctgtctctctaagtgtg 380

                                                  
Query: 181 tgcatttatggagggttggagagatgtggtgtgtgtgtg 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatttatggagggttggagagatgtggtgtgtgtgtg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no059_n13.g1 MSMg01no059_n13.g1 CHROMAT_FILE:
MSMg01no059_n13.g1 PHD_FILE: MSMg01no059_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:27 2005
         (320 letters)



>mm_chr4_125714532_125715251
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 318/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgatgttcccgttaggttctatcatccaggacttatagctgttattgtagctgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cagtgatgttcccgttaggttctatcatccaggacttatagctgttattgtagctgggag 347

                                                                       
Query: 61  aactcatttcccactcaatgagatagccctgaggcagaaggctgggggcttcccagtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aactcatttcccactcaatgagatagccctgaggcagaaggctgggggcttcccagtcta 287

                                                                       
Query: 121 cccagatggtgttaagatcttgggccatggcatggagtccggtcacagctggacctggag 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cccagatggtgttaaggtcttgggccatggcatggagtccggtcacagctggacctggag 227

                                                                       
Query: 181 gtaaagcagggaataggagtgaagacgaaaagtacgcaggcctcagtagcagacacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gtaaagcagggaataggagtgaagacgaaaagtacgcaggcctcagtagcagacacttgg 167

                                                                       
Query: 241 atccaaaccttgcctttgctgccgacagacctgtgatccagggtatgtcaatacctgatc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 166 atccaaaccttgcctttgctgccaacagacctgtgatccagggtatgtcaatacctgatc 107

                               
Query: 301 accaagctccacatctgtaa 320
           ||||||||||||||||||||
Sbjct: 106 accaagctccacatctgtaa 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)