BAC Information

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BAC

Clone NameMSMg01-060G02
Chromosome4 (Build37)
Map Location 66,857,064 - 66,857,607
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060G02.T7 (MSMg01no060_g02.b1)MSMg01-060G02.TJ (MSMg01no060_g02.g1)
ACCAG286837AG286838
length743711
length of high quality
(start - end)
39 (76 - 114)546 (79 - 624)
definitionCHROMAT_FILE: MSMg01no060_g02.b1 PHD_FILE: MSMg01no060_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:06 2005CHROMAT_FILE: MSMg01no060_g02.g1 PHD_FILE: MSMg01no060_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAACTGTTCTCCACACCACTTCATCCTTCTAGCCTTGGGGGCAGGTG
TGTCTGAATACTGATTTAGACCAGTTACTACTCAGAACCACAGCTATACA
GCACCTCCAACATGCATACACCACCTCTTGTTCCTTCTCAACCTCCTCTC
TTACCCAGTTCTCTCCCTCTATCCACACCAATGTCTATCATATTGATCGT
TCTCATAAATATTCCAACATCTTCTCCTGGCTCCTCCTTGTTACATAGTC
TCTTTGTGTTTGTAGATTGCACCTTGCCTATTCTGCGATTTATGGCTAAT
ATCTGCCTATTTTACAGTACATACTATTTTTGAAAGTGAACTCCACATGA
TGAGCCAACATAGTGATCCCCCATTTGACAGAACGACTTACACCACAGGA
CATGCCTAACCCTTCCCATAATACCATACGACACGACAACCTACTCCACT
ACCTCCTTACCCACATAACAATGTATTGCGTCCCCTTTGTTCCTTTTCCC
CCGCCTTATTCTCTTTACCTTCCCTCACCTATTTTCCCCCCTTCTCCACT
CCTCTTCCTTCTCTCACCCCCCCCTTCCTCTCCCCCTCCCTTTCCACTTT
TCCTCTCCCTACCCTACTTTTTTCTTCTATCTTCCCCCCCCTTCCCCTCT
CACTCCTACTCCTACCTTCCCCCTTTCACCATCTCCCTCTTTA
ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAACGAATGCCTAGATATGT
AGATGGATGGATCAATGGATAGATAGGCAAATAAATAAGAAACGGAACAT
CTGTCTTCACATTATTTAGTAATTAGGGTGTTGATCATGTACAACAAATT
GTTAAGCTGCCAGAATCTGAAAACTTATGGAATTGTATAGAACCACAGAT
AGACAAACAGACAGACAGACAGACAGACAGACACACACACACACACACAC
ACCTAAAAGTGCCACTAACAAAACCCTATGTTTTAAAAATGTTTTCTAAA
GAATAAACTTTTCAGAAAATGATCATAAATTTTCACTTTCCATTTTTCTT
TCAAAATTTTCAAATTGAACTTTTGGAGTTTAAGAAACAGGTGTCTACAC
CTTTCCTTCCTCAACTGTATCTTTTTAAAATGTAAAAAATTATTTTGCAT
ATGTAGCATTGAAGAAAGTAGGCAAAATTAAGACAATCTTATATGCAAAA
TCATATTTATAACCTATTTTGAAAAAAAACTTCTTTGTTCCATAAGAGAA
ATGTACAAAATGAAAGACTGAAAGCATTCCAAATAGCTAAGTCTATAAAT
AATTGGCGGGGGCGAGGGGGATTAATTTACCCTAACCCCCCCCCCTCCTC
TCCCTTCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_g02.g1 MSMg01no060_g02.g1 CHROMAT_FILE:
MSMg01no060_g02.g1 PHD_FILE: MSMg01no060_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:06 2005
         (546 letters)



>mm_chr4_66856864_66857809
          Length = 946

 Score = 1029 bits (532), Expect = 0.0
 Identities = 542/546 (99%), Gaps = 2/546 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaacgaatgcctagatatgtagatggatggatcaatggatagataggcaaataaataa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 attaacgaatgcctagatatgtagatggatggatcgatggatagataggcaaataaataa 260

                                                                       
Query: 61  gaaacggaacatctgtcttcacattatttagtaattagggtgttgatcatgtacaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaacggaacatctgtcttcacattatttagtaattagggtgttgatcatgtacaacaaa 320

                                                                       
Query: 121 ttgttaagctgccagaatctgaaaacttatggaattgtatagaaccacagatagacaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ttgttaagctgccagaatctgaaaacttatggaattgtatagaaccacagatagacagac 380

                                                                       
Query: 181 agacagacagacagacagacagacacacacacacacacacacacctaaaagtgccactaa 240
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacagacagacagacagaca--cacacacacacacacacacacctaaaagtgccactaa 438

                                                                       
Query: 241 caaaaccctatgttttaaaaatgttttctaaagaataaacttttcagaaaatgatcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaaaccctatgttttaaaaatgttttctaaagaataaacttttcagaaaatgatcataa 498

                                                                       
Query: 301 attttcactttccatttttctttcaaaattttcaaattgaacttttggagtttaagaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attttcactttccatttttctttcaaaattttcaaattgaacttttggagtttaagaaac 558

                                                                       
Query: 361 aggtgtctacacctttccttcctcaactgtatctttttaaaatgtaaaaaattattttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggtgtctacacctttccttcctcaactgtatctttttaaaatgtaaaaaattattttgc 618

                                                                       
Query: 421 atatgtagcattgaagaaagtaggcaaaattaagacaatcttatatgcaaaatcatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atatgtagcattgaagaaagtaggcaaaattaagacaatcttatatgcaaaatcatattt 678

                                                                       
Query: 481 ataacctattttgaaaaaaaacttctttgttccataagagaaatgtacaaaatgaaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ataacctattttgaaaaaaaacttctttgttccataagagaaatgtacaaaatgaaagac 738

                 
Query: 541 tgaaag 546
           ||||||
Sbjct: 739 tgaaag 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)