BAC Information

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BAC

Clone NameMSMg01-060G22
Chromosome4 (Build37)
Map Location 106,912,533 - 106,913,140
singlet/doubletsinglet
Overlap geneLrrc42
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840
Downstream gene2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060G22.T7 (MSMg01no060_g22.b1)MSMg01-060G22.TJ (MSMg01no060_g22.g1)
ACCAG286877AG286878
length704731
length of high quality
(start - end)		626 (47 - 672)---
definitionCHROMAT_FILE: MSMg01no060_g22.b1 PHD_FILE: MSMg01no060_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:09 2005CHROMAT_FILE: MSMg01no060_g22.g1 PHD_FILE: MSMg01no060_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTATCTTGTCTTATTTTTTCTACTTGCAACATGAAGCAACCAT
ACTAGATCCTTCACAGTCCAACTACCTAGGACTCTGATGAACAGAAAAAT
AGAGGATTAAGGCAGTTACCCCACACGCTGAGGAGCTACAGAACCAGTGA
AATGGTACACACTGTCCTGCTCGCCACCAGTTCACCTCTGAAGTAAGCAG
GGCATGTGTTCAGTTTGAGAAGACTTTCAGGTACTGACAAACAGGGGCCA
TCACTAACCACTGTGACTATCTCGTTTGTCAGAAGCTTTTCTTACACAGC
GCCTTTTCACATCAGAGTACTGCTTTAGCTGTTTCCTCTAGGAATCCTAA
GCACGGTGGCAGCGATACAGCAGATGCTCAACAGGTAGTCACTGAATAGG
TAGCTTCCCTGGAAGTATGCCAGGGGATTCAGCAACATTACTGTACAGAG
GCCAAAACCAAGGCTCAGAAGTCAAGTAATTGCCCAAGGGTACAAAACCA
CCCTCTGTCCTCGCCTCTTCGGTTTCTACTCACTGGGAACCAACCCACCT
TGCCACAGGCGGTATTTACTGGACTCTCAAACTGCTAACTTCCTATCACT
GGAGTCAAGTTAATCTTAAATTACCAAGAGAGTGATTTATTCTGCTCCTT
AGTC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAATAATTCGGAAGTGTTTTACTCCTT
GTTTATACGTTTTACTTATCGCGCCGATGAGAAAGAGCTTGACCTAGAAC
GTCCCTCACCACCTCGTGCGATCTCTGGACCTGAAAGCTTAACCAGCGGG
AAACTGACCATAACACAGGTGTTGTGAATCAGACACCTCATTATGTCGCT
GTTCTCAGAACCATCTGCTCACAGCTGGACCACCTACCTGTCTGACAAAC
CCTGCGACTCCATTTACACTTAACGGCATTCACCTCGTCTACAAAACGAT
ATGGAGCACTGGCTTCCTGTCTGTAACGCTCGCATAGAAAAAATATATCC
TCCTGACCTGATAGTCCGCTCTACTCACTGTTGACATACTTGCGGCTCGG
CTAATATCTCACAGGTTACCCTGTGTTGTCTCATGGAAAATAAAAACGAG
GTGCTGGCTCGAAACTCCCTGTCAGAACGGGACGCCGGGGGTGCACCAAC
ATATAAAATCTTCCAATCCTCCACGACCCCCCCAAAAAACTAATAAACCT
CTGGGTGGACAAAAAATCCGCAGACCAAAAAAAAACGGGGGGCTGGAAAA
AGGATTGGGGCAACGAAAAAAAAGCCCCTGTTAAAAAATTGGGCGGCTGA
TAACCCCCGCCCCCAATAACCACACCCGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_g22.b1 MSMg01no060_g22.b1 CHROMAT_FILE:
MSMg01no060_g22.b1 PHD_FILE: MSMg01no060_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:09 2005
         (626 letters)



>mm_chr4_106912315_106913340
          Length = 1026

 Score = 1160 bits (600), Expect = 0.0
 Identities = 606/608 (99%)
 Strand = Plus / Plus

                                                                       
Query: 19  gtcttattttttctacttgcaacatgaagcaaccatactagatccttcacagtccaacta 78
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 219 gtcttattttttctacttgcaacatgaagcaaccacactagatccttcacagtccaacta 278

                                                                       
Query: 79  cctaggactctgatgaacagaaaaatagaggattaaggcagttaccccacacgctgagga 138
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 279 cctaggactctgatgaacagaaaaatagaggattaagacagttaccccacacgctgagga 338

                                                                       
Query: 139 gctacagaaccagtgaaatggtacacactgtcctgctcgccaccagttcacctctgaagt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctacagaaccagtgaaatggtacacactgtcctgctcgccaccagttcacctctgaagt 398

                                                                       
Query: 199 aagcagggcatgtgttcagtttgagaagactttcaggtactgacaaacaggggccatcac 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aagcagggcatgtgttcagtttgagaagactttcaggtactgacaaacaggggccatcac 458

                                                                       
Query: 259 taaccactgtgactatctcgtttgtcagaagcttttcttacacagcgccttttcacatca 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taaccactgtgactatctcgtttgtcagaagcttttcttacacagcgccttttcacatca 518

                                                                       
Query: 319 gagtactgctttagctgtttcctctaggaatcctaagcacggtggcagcgatacagcaga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gagtactgctttagctgtttcctctaggaatcctaagcacggtggcagcgatacagcaga 578

                                                                       
Query: 379 tgctcaacaggtagtcactgaataggtagcttccctggaagtatgccaggggattcagca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgctcaacaggtagtcactgaataggtagcttccctggaagtatgccaggggattcagca 638

                                                                       
Query: 439 acattactgtacagaggccaaaaccaaggctcagaagtcaagtaattgcccaagggtaca 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acattactgtacagaggccaaaaccaaggctcagaagtcaagtaattgcccaagggtaca 698

                                                                       
Query: 499 aaaccaccctctgtcctcgcctcttcggtttctactcactgggaaccaacccaccttgcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaaccaccctctgtcctcgcctcttcggtttctactcactgggaaccaacccaccttgcc 758

                                                                       
Query: 559 acaggcggtatttactggactctcaaactgctaacttcctatcactggagtcaagttaat 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 acaggcggtatttactggactctcaaactgctaacttcctatcactggagtcaagttaat 818

                   
Query: 619 cttaaatt 626
           ||||||||
Sbjct: 819 cttaaatt 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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