BAC Information

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BAC

Clone NameMSMg01-060K14
Chromosome4 (Build37)
Map Location 102,353,995 - 102,465,740
singlet/doubletdoublet
Overlap geneSgip1
Upstream geneLepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneTctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060K14.T7 (MSMg01no060_k14.b1)MSMg01-060K14.TJ (MSMg01no060_k14.g1)
ACCAG287053AG287054
length694723
length of high quality
(start - end)
364 (51 - 414)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no060_k14.b1 PHD_FILE: MSMg01no060_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:26 2005CHROMAT_FILE: MSMg01no060_k14.g1 PHD_FILE: MSMg01no060_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,353,995 - 102,354,352)(102,465,449 - 102,465,740)
sequence
NAACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATTTCCTTTCCGATATTAGCTCCCTCACAAGGCTCCC
AGAAGTTCTTTACGCAGCCTTTAGAAACAAAGCCAGGAGCTGGTTCTTTG
TGGTACCTCTGCCTTCAAGTTCTCTTATCTTTCCCAAACCTGAGTCTTCA
TTTTTCAGGAGGAAAGATGCAGCATTCTCTCAATTGTGAAACTCTCTTTC
CAGGATCACCCTGGGTTTACTTGTTTTATACCCTATTTTCAGTGCTTCTG
TTGGCATATAGCACCAAGAACATGACTTGTTACTCCACTGGTAGTCTGCT
TTCAACTGAATCACACATTTCCATGAATGCAGTCCAAATTGATTAGGTCA
CTGGGTTCCCAGTACAATACAGACAGATTTTCTGAGTATAATTCTCCAGT
GCTCCAGAATGCTCAGGAACCTCTCATAACTTACCCAGAAATCCTTGGAA
TTCTTAATTAATAAGGCATGCTATCAACATCCGTCAAAGCAGCTAATTGA
ATTTCAGACACCCCATCCCCTGCTTTTCTAGGAAATCCACTAGCCTCCCC
GATCTGTTCTTCTGCCGAACTTGGTGACAATCCCTTGCATTATCCGAGTG
CCCTTTCCATCCTTTGTACCGACATATTTACTGCTTCTCATTTG
ACAGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTTAGTAAACATGTCTCCCGGGCACCTGCC
TTGCATGCTGTGTGTAAGTCAGTCACAGCTTCCCCTGATTCAGCTGCAGT
GTCCTTCCTCACGTACTAGACACAGTGACCACGGCATACTGTCACTTTCT
GCCCCTAAGCAGATCTTAGTTTCCGGTGAGGCTTAAGTCCCTGGAACATT
TGACTGTGGCAGTGAACCTACAGAAAGGCCAAAGGACCCGAGTTCAAGCC
CAGACACATTTCACATTAACTTTTGCGGAGGAGACCTGAATGTGAGCATT
GTTAGGACTAGTTGGCAGCCATGCTTTTGTTTCCTGTGATGTCCTTAGAG
ACCTGTCACAACACCACTCCATGACTATGACAAGAAGTAGTAACCATATT
ACCAACCATCAATATAATTTCAGCAGTTTATCAGTTTTTGCTTATTACGC
TTGACTTGAATCTTACTCAAATCAGCGCTTCTGCCCCTAGTTAAGTTTGC
TGCCTGCCACTGTTCCCAGTTAACTAATGTCTGTATTTGCAATCTCTGTA
TGCACTTCCTTTTCTGGCTGCCCCACAGAGGACTCCTCGGATTTCACGTG
TCTTTTTAGTGAGAGCAAGTACTAATTAATAATGGATGCAACAAAAGAGA
CACACCTCCTTTCCCCTTATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_k14.b1 MSMg01no060_k14.b1 CHROMAT_FILE:
MSMg01no060_k14.b1 PHD_FILE: MSMg01no060_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:26 2005
         (364 letters)



>mm_chr4_102353791_102354554
          Length = 764

 Score =  661 bits (342), Expect = 0.0
 Identities = 354/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttatttcctttccgatattagctccctcacaaggctcccagaagttctttacg 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatttgttttccgatattagctccctcacaaggctcccagaagttctttacg 264

                                                                       
Query: 65  cagcctttagaaacaaagccaggagctggttctttgtggtacctctgccttcaagttctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcctttagaaacaaagccaggagctggttctttgtggtacctctgccttcaagttctc 324

                                                                       
Query: 125 ttatctttcccaaacctgagtcttcatttttcaggaggaaagatgcagcattctctcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatctttcccaaacctgagtcttcatttttcaggaggaaagatgcagcattctctcaat 384

                                                                       
Query: 185 tgtgaaactctctttccaggatcaccctgggtttacttgttttataccctattttcagtg 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgtgaaactctctttccaggatcaccctgggtttacttgttttataccctattttcagtg 444

                                                                       
Query: 245 cttctgttggcatatagcaccaagaacatgacttgttactccactggtagtctgctttca 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 cttctgttggcatatagcaccaagaacaggacttgttactccactggtagtctgctttca 504

                                                                     
Query: 305 actgaatcacacatttccatgaatgcagtccaaattgattaggtcactgggttcccag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgaatcacacatttccatgaatgcagtccaaattgattaggtcactgggttcccag 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_k14.g1 MSMg01no060_k14.g1 CHROMAT_FILE:
MSMg01no060_k14.g1 PHD_FILE: MSMg01no060_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:27 2005
         (292 letters)



>mm_chr4_102465249_102465940
          Length = 692

 Score =  511 bits (264), Expect = e-149
 Identities = 285/292 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttagtaaacatgtctcccgggcacctgccttgcatgctgtgtgtaagtcagtcacag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 492 actttagtaaacatgtctcccgggcacctgccttgcatgctgtgtgcaagtcagtcacag 433

                                                                       
Query: 61  cttcccctgattcagctgcagtgtccttcctcacgtactagacacagtgaccacggcata 120
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 432 cttcccctgattcagctgcaatgaccttcctcacgtactagacacagtgaccacggcata 373

                                                                       
Query: 121 ctgtcactttctgcccctaagcagatcttagtttccggtgaggcttaagtccctggaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctgtcactttctgcccctaagcagatcttagtttccggtgaggcttaagtccctggaaca 313

                                                                       
Query: 181 tttgactgtggcagtgaacctacagaaaggccaaaggacccgagttcaagcccagacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttgactgtggcagtgaacctacagaaaggccaaaggacccgagttcaagcccagacaca 253

                                                               
Query: 241 tttcacattaacttttgcggaggagacctgaatgtgagcattgttaggacta 292
            ||| ||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 252 gttcgcattaacatttggggaggagacctgaatgtgagcattgttaggacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)