XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GCAATTCCGCTCCACTCTCTGGCCAGAAATGCCCTACGAGTCCACTTGTT
CTGTTTCCATTTCTTCAGCTGGGATTACAAACTATGGTGTTCTGTGTATG
TATGTTGGGTGGTTTCTAGAACTTGAACTCTGTTCCAGAGGACTGTTTTA
TAAGACATTATCTACCGCCATAAATATAAAATAATTTTACGAATTTAAAA
AGTTTAACATAATGGTCATGGTGTACTAGTATATTATGCAAAAGCATGCT
ATTTGTTGCCTGTGATTTTTTTTAAAAATTCAAAATTGAGTTTACATAAT
AATACTGAAAATAAAATAAAATCTTGTAATTTTAGCTAAAATACTATTTA
GATTCTACCCCCGCATTTTATCAGCATTAATGTACAGTGATAGCTTCACC
CATTGCTTCAATTCATACAAGTTCATGTAAAGCAAACAAGAATACATAAT
ACCCGCCTACACCTACATTTGAATATTGAAAAACCAAAACTGTATTTACA
CAATCTAAACCTGTAATTGAAATGTTTTATAAAGCGTTATTTTGAAAAAT
CCATTATTGGGATTGTAGAACCTGTTTTTACTTTGTAAGAAGGCCATAAA
TTGTGGTGAGTCTCTCAGCTCAGCTTTAAAACTGCTTTTTCATATAATAT
TCCTATAAG

CCCTTCCTTTATCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGTAAAATTC
AATTATGAATTTTATTTATGAAGTAAAATATTTAAGAATGCATTTTATTA
TAGTGAAAACAAGACCAAATCAGATGTTAGCATCATTTTAAAATCTCAAA
ATAACTAGACTGAAGATTTGACAAAATAGCACAGCAAACATATTATAGTC
AACGAAACAGAATCCAAAATAGATCCTTTAGAAAAACTGCTTACCCAACT
GGACCCTGAATGAAGAATATCCTTCTATAATTTTCATTATCCGAACAATC
CGCCTCCGACGCACGCCGGCAAGTCTTTATTCACCCTTTCTACATGCCAT
CTCCATTACACTATCCTTATTAGCTCCCATTCCCCCTCCCTAAAATTGAA
ACCATGACCCTAATGTATTGACTCTCCCACCCCGTTCTCCCAAATCTATA
CGCACTTGCGCCCCGCCCTGCGCATTGTACCTACTTTGACCTACCTTCCA
CCCTTCCACACCCACCTACCTTACCCGTATGTCCATGCCGCCTGTGCCAT
ATTTCCACTACTCCCGCACCCACGCCCCTCCCTCCCCCTCCCCCCCCCCC
TCTCCTCCCTCTCTCCCTTACCCCTCCTTCCTCACATACCACCCCTCCCT
CCTCTTACCTTCATCAATCCCCCTTCCAATGTT

Query= MSMg01no060_l09.b1 MSMg01no060_l09.b1 CHROMAT_FILE:
MSMg01no060_l09.b1 PHD_FILE: MSMg01no060_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:30 2005
         (668 letters)



>mm_chr4_29409625_29410691
          Length = 1067

 Score = 1224 bits (633), Expect = 0.0
 Identities = 656/669 (98%), Gaps = 11/669 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaattccgctccactctctggccagaaatgccctacgagtccacttgttctg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaattcagctccactctctggccagaaatgccctacgagtccacttgttctg 264

                                                                       
Query: 65  tttccatttcttcagctgggattacaaactatggtgttctgtgtatgtatgttgggtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttccatttcttcagctgggattacaaactatggtgttctgtgtatgtatgttgggtggt 324

                                                                       
Query: 125 ttctagaacttgaactctgttccagaggactgttttataagacattatctaccgccataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctagaacttgaactctgttccagaggactgttttataagacattatctaccgccataa 384

                                                                       
Query: 185 atataaaataattttacgaatttaaaaagtttaacataatggtcatggtgtactagtata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atataaaataattttacgaatttaaaaagtttaacataatggtcatggtgtactagtata 444

                                                                       
Query: 245 ttatgcaaaagcatgctatttgttgcctgtgattttttttaaaaattcaaaattgagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatgcaaaagcatgctatttgttgcctgtgattttttttaaaaattcaaaattgagttt 504

                                                                       
Query: 305 acataataatactgaaaataaaataaaatcttgtaattttagctaaaatactatttagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acataataatactgaaaataaaataaaatcttgtaattttagctaaaatactatttagat 564

                                                                       
Query: 365 tctaccccc-----gcattttatcagcattaatgtacagtgatagcttcacccattgctt 419
           ||||          | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcta-----agtgtgtattttatcagcattaatgtacagtgatagcttcacccattgctt 619

                                                                       
Query: 420 caattcatacaagttcatgtaaagcaaacaagaatacataatacccgcctacacctacat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caattcatacaagttcatgtaaagcaaacaagaatacataatacccgcctacacctacat 679

                                                                       
Query: 480 ttgaatattgaaaaaccaaaactgtatttacacaatctaaacctgtaattgaaatgtttt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgaatattgaaaaaccaaaactgtatttacacaatctaaacctgtaattgaaatgtttt 739

                                                                       
Query: 540 ataaagcgttattttgaaaaatccattattgggattgtagaacctgtttttactttgtaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ataaagcgttattttgaaaaatccattattgggattgtagaacctgtttttactttgtaa 799

                                                                       
Query: 600 gaaggccataaattgtggtgagtctctcagctcagctttaaaactgctttttcatataat 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 800 gaaggccataaattgtggtgagtctctcagctcagctttaaaactgctttt-catataat 858

                    
Query: 660 attcctata 668
           |||||||||
Sbjct: 859 attcctata 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space:   695506
Effective search space used:   695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)