Query= MSMg01no060_n12.b1 MSMg01no060_n12.b1 CHROMAT_FILE:
MSMg01no060_n12.b1 PHD_FILE: MSMg01no060_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:40 2005
(570 letters)
>mm_chr4_63803139_63804108
Length = 970
Score = 1087 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Plus
Query: 5 gaattccatagttgccggtgaggttaattgtgtatatacatgtgtgagcagatcaatgtg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatagttgctggtgaggttaattgtgtatatacatgtgtgagcagatcaatgtg 264
Query: 65 ccatgacgctccagcaagccaatgtctgcctcacttcacacccctgcagattgtgtaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatgacgctccagcaagccaatgtctgcctcacttcacacccctgcagattgtgtaagg 324
Query: 125 aatgtccagacactttctttttccagcatgacgtaatgtggaatgagaagacctgcagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtccagacactttctttttccagcatgacgtaatgtggaatgagaagacctgcagaa 384
Query: 185 catgcagcccatagccagacagatgacctcactcccttcctgggcattcccaagctctgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgcagcccatagccagacagatgacctcactcccttcctgggcattcccaagctctgc 444
Query: 245 tgttacaaaagaacaacccccagactcacaatgtttggtccacaggtggtggttttagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttacaaaagaacaacccccagactcacaatgtttggtccacaggtggtggttttagtc 504
Query: 305 ctcagtcttttgttggcaaattacttcaaatgatctccaagctcccctgtggctggcggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcagtcttttgttggcaaattacttcaaatgatctccaagctcccctgtggctggcggg 564
Query: 365 aggacagctctgacggatacagtctggcctattttttcagccaaatggaatgaattcagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggacagctctgacggatacagtctggcctattttttcagccaaatggaatgaattcagc 624
Query: 425 ccgaggataaaccaagacataaagggggataaatatgtttcagcatcagccacaaggaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccgaggataaaccaagacataaagggggataaatatgtttcagcatcagccacaaggaga 684
Query: 485 caagctgtgaggagttagctgtagtgatggggaagtttaaagaacaaagtaggaaacacg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caagctgtgaggagttagctgtagtgatggggaagtttaaagaacaaagtaggaaacacg 744
Query: 545 tttcatggatcctaacaggctcaggt 570
||||||||||||||||||||||||||
Sbjct: 745 tttcatggatcctaacaggctcaggt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_n12.g1 MSMg01no060_n12.g1 CHROMAT_FILE:
MSMg01no060_n12.g1 PHD_FILE: MSMg01no060_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:40 2005
(408 letters)
>mm_chr4_63920320_63921127
Length = 808
Score = 532 bits (275), Expect = e-155
Identities = 306/329 (93%), Gaps = 20/329 (6%)
Strand = Plus / Minus
Query: 1 tttgtgcccttaaagatgacctaggttcagatcccagagcaaacacagcagctcacaact 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 309 tttgtgcccttaaagatgacctaggttcaaatcccagagcaaacacagcagctcacaact 250
Query: 61 gtacagtattgactatctcctctgcagacacctacatgcatgctccgtgcacacacacac 120
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtacagtattgactatctcctctgcagacacctacatgcatgctccgtg----------- 201
Query: 121 acacacacacacacacacacacacacacacacacacacagagcaaaaaaatatttaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ---------cacacacacacacacacacacacacacacagagcaaaaaaatatttaaagt 150
Query: 181 catctaaaaagccttaagagatgggttgatagatacattgtttactataagggcattaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 catctaaaaagccttaagagatgggttgatagatacattgtttactataagggcattaaa 90
Query: 241 acccaagttcagatcccaagcacttgcctaaaaccttgagtgttacttataaatctataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 acccaagttcagatcccaagcacttgcctaaaaccttgagtgttacttataaatctataa 30
Query: 301 tctcggaaatggggaggtggaggcaagca 329
|||| ||||||||||||||||||||||||
Sbjct: 29 tctcagaaatggggaggtggaggcaagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
