BAC Information

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BAC

Clone NameMSMg01-061C11
Chromosome4 (Build37)
Map Location 72,460,934 - 72,461,266
singlet/doubletsinglet
Overlap genenone
Upstream geneTle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061C11.T7 (MSMg01no061_c11.b1)MSMg01-061C11.TJ (MSMg01no061_c11.g1)
ACCAG287429AG287430
length707706
length of high quality
(start - end)
663 (45 - 707)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no061_c11.b1 PHD_FILE: MSMg01no061_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:03 2005CHROMAT_FILE: MSMg01no061_c11.g1 PHD_FILE: MSMg01no061_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCATTCATGACTTCATTCCTTTGTTTTTCTTTTTTACATTTCTGATG
TTATCCCTTTCCTGGTTTCCCCTCCAAAAACACCCTATCCTATCCCCTCC
CCCTGCCCACCAGCCCACCCAATCTTGTTTCCCTCTCCTGGTATTCCCCT
ACACTGGGGCATTGAGCCTTCCTAGGACCAAGGGTCTCTCCTCACATTGA
TGTCCAACAAGACCACCCTCTGCTACATAAGCAGTTAGAGGCACGAGTCT
CACCATGTGTACACTTTGGTTGGTTGTTTAGTCCCTGGAAGCTCTGGGGA
TATTGGTTAGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAATGCCTTC
AGCTCCTTGGGTCCTTTCTCCACCTCCTCCATTGGGGACACTGTGCTTAG
TTCAATGGATGGGTGAGAGCATCTACCTCTGTATTTGTTGGGTACTGGCA
GAGCCTCTCAGGAGACTGCTATATCAGACTCCTGTCAGTAAGCACTTGTT
AGCATCCACAATAGTGTCTGGTTTTGGTGACTGTATTTGGAATAGTTCAT
GCAGGGCAAGTCAGAAGATACAGTTGAAGACAAGTAATCAGAAGGTCCCA
GAAAATTAGAAGAAATTGCCAGAGTTACTTTGAGGCCAAGCAGAGCATTT
CAGTGAG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGATAAGGTAATTATGCTATGTGTC
ACTGTCATGATTAATGTGTGACAGCTGTTATGACAGCTGTGCCACTGTTT
TGTCAGAATACTCTGTTCATCCATAACAAAATTAGCTGTCATACCCAAAG
GTACACACCTGCTGCTATTTCTTTCTGAAGTCAACAATGAGAAAATCAAG
AGGGAAAATTACATGATCTCTATGACAAACAAGAAAAATGACATCTTGGG
GGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCTTTAAA
TGATGATATAACCTGCTTGCTTTGGAAATGCAGATAGCTCAGCTCCAGCA
AGCAAGCTGTCATAAGAACCCAANCCACCACTAATCTAGCTAACAAGGCT
TCAGTGTACAAAGGTTTGCTTCATCATTTGGATCTGCCTTGTCAGGCAAG
TCTTTTAGATGTTTCCTAAATCAGGACAGGCTGAAGCTGTCTCTACCTGT
CAAGGTGAGAGCCTGTGAGTGCGCAATTATTATAGAACGTGCGAGAATGA
CTTATGCTTTATTGTGAGAATCAGTCAAGTGGAGCAAAACAGCAGCCCTT
ACTCTGTCTCTGTCAAGTCTGCAATTGTCCTTTCCCCTGCCTATACCAAC
GTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_c11.g1 MSMg01no061_c11.g1 CHROMAT_FILE:
MSMg01no061_c11.g1 PHD_FILE: MSMg01no061_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:03 2005
         (343 letters)



>mm_chr4_72460838_72461580
          Length = 743

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/343 (97%), Gaps = 10/343 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagataaggtaattatgctatgtgtcactgtcatgattaatgtgtgacagctgttatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cagataaggtaattatgctatgtgtcactgtcatgattaatgtgtgacagctgttatgac 370

                                                                       
Query: 61  agctgtgccactgttttgtcagaatactctgttcatccataacaaaattagctgtcatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agctgtgccactgttttgtcagaatactctgttcatccataacaaaattagctgtcatac 310

                                                                       
Query: 121 ccaaaggtacacacctgctgctatttctttctgaagtcaacaatgagaaaatcaagaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccaaaggtacacacctgctgctatttctttctgaagtcaacaatgagaaaatcaagaggg 250

                                                                       
Query: 181 aaaattacatgatctctatgacaaacaagaaaaatgacatcttgggggtttttgttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaattacatgatctctatgacaaacaagaaaaatgacatcttgggggtttttgttttgt 190

                                                                       
Query: 241 tttgttttgttttgttttgttttgtttttctttaaatgatgatataacctgcttgctttg 300
           ||||||||||||||||||          ||||||||||||||||||||||||||||||||
Sbjct: 189 tttgttttgttttgtttt----------tctttaaatgatgatataacctgcttgctttg 140

                                                      
Query: 301 gaaatgcagatagctcagctccagcaagcaagctgtcataaga 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gaaatgcagatagctcagctccagcaagcaagctgtcataaga 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)