BAC Information

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BAC

Clone NameMSMg01-061C18
Chromosome4 (Build37)
Map Location 7,262,175 - 7,262,515
singlet/doubletsinglet
Overlap genenone
Upstream geneSdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061C18.T7 (MSMg01no061_c18.b1)MSMg01-061C18.TJ (MSMg01no061_c18.g1)
ACCAG287443AG287444
length729734
length of high quality
(start - end)
556 (36 - 591)341 (66 - 406)
definitionCHROMAT_FILE: MSMg01no061_c18.b1 PHD_FILE: MSMg01no061_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:04 2005CHROMAT_FILE: MSMg01no061_c18.g1 PHD_FILE: MSMg01no061_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCTGCCCCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGA
ATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTAAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGA
TTTGACCCCACCACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTC
TGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCTGTAGTAT
AGCTTTTATGTCCGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGA
GAAAAGTTTTTGCTACCCTAGGTTTTTTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTCCCACCCAATCTTTTAGATTTTCTAAGCATTG
TTCTGCTAAAAGTAATCAACAGTGTTAGACTGGGTATATATGATCTATCC
AGTCTCAACAAACAAATACCAAAGCTCCTGAGAGCCTGGAAAGTGGTTAT
GTGAAAGACAGAAGAATAAGATTTTCTATCTCTATTTATATCTATAGCTG
TATTATTTATATCTACATGTATCTCATCATCTATATATCATCTATATCTA
TCTAGAGATATATAAATATACGAGAATATATGTATAAGTAGGAAGTATGT
ATAAGTAAGAATATATATGTGTGTGTGTGTATGTATATAAATAAAGTATA
TACATACACCCCACAGGTAAGAAATGACTATACATAAGTATGGAGATACT
ATAGTATCTCATAAGTACTTTCATTTCTTCTTTGAAAGAGTCTTTATCTT
TATCCTTTATTAAAAATTTATTTTTTCTCACATAATATTCCTGATTATGA
CTTCCCCTCCCTCTACTTATCTCAGTTCCTCCCCACTATACCTACAATCT
AGATCTACTCCCTTTCTGATCTCATTAAAATCATATAAGATTTTAAAGGA
TTGTCGTAAAATTTAATAAAACACCTTTAATCTATTGTCTTTGAACAATA
CTCTAACTTATTTTGTCCACATTGCAACTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_c18.g1 MSMg01no061_c18.g1 CHROMAT_FILE:
MSMg01no061_c18.g1 PHD_FILE: MSMg01no061_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:04 2005
         (341 letters)



>mm_chr4_7262155_7262895
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcccacccaatcttttagattttctaagcattgttctgctaaaagtaatcaacagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctcccacccaatcttttagattttctaagcattgttctgctaaaagtaatcaacagtgt 302

                                                                       
Query: 61  tagactgggtatatatgatctatccagtctcaacaaacaaataccaaagctcctgagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagactgggtatatatgatctatccagtctcaacaaacaaataccaaagctcctgagagc 242

                                                                       
Query: 121 ctggaaagtggttatgtgaaagacagaagaataagattttctatctctatttatatctat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctggaaaggggttatgtgaaagacagaagaataagattttctatctctatttatatctat 182

                                                                       
Query: 181 agctgtattatttatatctacatgtatctcatcatctatatatcatctatatctatctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agctgtattatttatatctacatgtatctcatcatctatatatcatctatatctatctag 122

                                                                       
Query: 241 agatatataaatatacgagaatatatgtataagtaggaagtatgtataagtaagaatata 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatatataaatatatgagaatatatgtataagtaggaagtatgtataagtaagaatata 62

                                                    
Query: 301 tatgtgtgtgtgtgtatgtatataaataaagtatatacata 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatgtgtgtgtgtgtatgtatataaataaagtatatacata 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)