Query= MSMg01no061_o22.b1 MSMg01no061_o22.b1 CHROMAT_FILE:
MSMg01no061_o22.b1 PHD_FILE: MSMg01no061_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:02 2005
(698 letters)
>mm_chr4_45786788_45787885
Length = 1098
Score = 1093 bits (565), Expect = 0.0
Identities = 671/731 (91%), Gaps = 41/731 (5%)
Strand = Plus / Minus
Query: 6 gaattcaaaactgatgcccctctaacaaaggaaaccccagattctaatggctttgctgtg 65
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 864 gaattcaaaactgaaggccctccaacaaaggaaaccccagattctaatggctttgctgcg 805
Query: 66 agcctaataccgagtgatttcagaaagaaagagtaccaatcctacaccaactcttacaga 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 804 agcctaataccgagtgatttcagaaagaaagagtaccaatcctacaccaactcttataga 745
Query: 126 aaatagaagaggaggaaacacttctctatcattttagaggcctaatgccctccctccgag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaatagaagaggaggaaacacttctctatcattttagaggcctaatgccctccctccgag 685
Query: 186 cagacaaagacggtccttacagaaggatagctacagcctaaaattcctcatgaatataga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagacaaagacggtccttacagaaggatagctacagcctaaaattcctcatgaatataga 625
Query: 246 tgcaaaa-aatcctcaagaaaatattatcaaatcagtgtgtgtaaagattgttcagaacc 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcaaaagaatcctcaagaaaatattatcaaatcagtgtgtgtaaagattgttcagaacc 565
Query: 305 gactcactgggaatgccacactggggagtggtgagcagacactgaagacagagagaggag 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 gactcactgggaatgccacactggggagcggtgagcagacactgaagacagagagaggag 505
Query: 365 ctacagttgcacaccccagggactgctttttctttgatacccatctcaggtatcccaggt 424
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctacagttgcaaagcccagggactgctttttctttgatacccatctcaggtatcccaggt 445
Query: 425 tggccacaaacttgctatatagtcagagataaccttgaacaacttcttcttcttcttt-- 482
|||||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct: 444 tggccacaaacttgctctgtagtcagagataaccttg---aacttcttcttcttcttttt 388
Query: 483 ----------ttt-------------------------taagacagggtttctctgtgta 507
||| | ||| |||||||||||||||
Sbjct: 387 cttcctcttctttcttcttcttcttcttcttgttcttctgagatggggtttctctgtgta 328
Query: 508 gccctggctgtcctggagctcactctgtagaccaggctggcctcgaactcagaaatctac 567
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 327 gccctggctgtcctggagctcactctatagaccaggctggcctcaaactcagaaatctac 268
Query: 568 ctgcctctgccttccaagtgctgggattaaaggcgtgtgccaccacagcccagcaacctt 627
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 267 ctgcctctgccttccaagtcctgggattaaaggtgtgtgccaccaccgcccagcaacctt 208
Query: 628 gaacttctgatgcttctacttccactgtccaagtgcttagattccaggagggtactacca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 207 gaacttctgatgcttctacttccactgtccaagtgcttagattccaggagggtaccacca 148
Query: 688 caccaggtttc 698
|||||||||||
Sbjct: 147 caccaggtttc 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_o22.g1 MSMg01no061_o22.g1 CHROMAT_FILE:
MSMg01no061_o22.g1 PHD_FILE: MSMg01no061_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:02 2005
(560 letters)
>mm_chr4_45670874_45671833
Length = 960
Score = 1036 bits (536), Expect = 0.0
Identities = 557/570 (97%), Gaps = 10/570 (1%)
Strand = Plus / Plus
Query: 1 aaaattaatatacatacagaaaaagaaatgctaaagagcactaaccagacaagaaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaattaatatacatacagaaaaagaaatgctaaagagcactaaccagacaagaaaaatt 260
Query: 61 atatttgatagaattattctacagaaaataataaaaagcattagaaatggaaactatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttgatagaattattctacagaaaataataaaaagcattagaaatggaaactatatg 320
Query: 121 gtaactacatttttttaatactgcttaaaagctttttaaaggtaacttgctattcgcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaactacatttttttaatactgcttaaaagctttttaaaggtaacttgctattcgcata 380
Query: 181 gagtaattatagttcaatatagggtttatagtatgtgtaacagtagaggtctaacaatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtaattatagttcaatatagggtttatagtatgtgtaacagtagaggtctaacaatag 440
Query: 241 caccagtgttgagagcaggaaattatatcattaagaggtttctaaaggacgctcatgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccagtgttgagagcaggaaattatatcattaagaggtttctaaaggacgctcatgtgt 500
Query: 301 gtgtgtgtgtgtgtg----------ctatagcatgtatgtggaggtcagaggacaactcg 350
||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 501 gtgtgtgtgtgtgtgtgtgtgtgtgctatagcatgtatgtggaggtcagaggacaacttg 560
Query: 351 tagggtccagtacttttcttccaccatgtgggttttggaggtcactctggttgccaagct 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagggtccagtacttttcttccaccatgtgggttttggaggtcactctggttgccaagct 620
Query: 411 tggcagcaaacacccttactggtaagttatcttagcagtccccttgtaaaattcataccc 470
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tggtagcaaacacccttactggtaagttgtcttagcagtccccttgtaaaattcataccc 680
Query: 471 tatgcatgaaggattgaggtggtatactctctgcagtaatttgagtaagcgtgaccccca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgcatgaaggattgaggtggtatactctctgcagtaatttgagtaagcgtgaccccca 740
Query: 531 tagacttatatatttgaatgcctagggagt 560
||||||||||||||||||||||||||||||
Sbjct: 741 tagacttatatatttgaatgcctagggagt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
