Query= MSMg01no062_m04.b1 MSMg01no062_m04.b1 CHROMAT_FILE:
MSMg01no062_m04.b1 PHD_FILE: MSMg01no062_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:41 2005
(681 letters)
>mm_chr4_12054649_12055729
Length = 1081
Score = 1265 bits (654), Expect = 0.0
Identities = 675/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Minus
Query: 1 ccaagatcgaggtcagaaacttctatctccctgcctccagattaggcccactggtgaacc 60
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1006 ccaagatcgaggtcagaaacttctatctcccagcctccagattaggatcactggtgaacc 947
Query: 61 ttccaattctagattgtagttcattccagatatagtcaagttgaaaaccaggaatagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ttccaattctagattgtagttcattccagatatagtcaagttgaaaaccaggaatagcca 887
Query: 121 ctacagggatatttttctaggataaactctcatctacatgccattgccaccctcgatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctacagggatatttttctaggataaactctcatctacatgccattgccaccctcgatgaa 827
Query: 181 acacgtacttaaagtgctagaaccaggtattttctgttgctgtagtattatttcctgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 acacgtacttaaagtgctagaaccaggtattttctgttgctgtagtattatttcctgaca 767
Query: 241 cactaaatagactgtgtcctagagtttgaaataaattttaaatagccacccctatatgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cactaaatagactgtgtcctagagtttgaaataaattttaaatagccacccctatatgtc 707
Query: 301 tgatacatctttacctatgtgcatggtaacctagcaacctggtgcctcaagtctaagatt 360
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 706 tgatccatctttacctatgtgcatggtaacctagcaacctggtgcctcaggtctaagatt 647
Query: 361 attttttttctggaccttattattcaatcaactcagca-gatcactattgaggctgctgg 419
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 646 attttttttctggaccttattattcaatcaactcag-aggatcactattgaggctgctgg 588
Query: 420 ggagcaggatactgcatactgtgggtattggtaccatggtgacccttacaaagccttagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggagcaggatactgcatactgtgggtattggtaccatggtgacccttacaaagccttagc 528
Query: 480 gaccacagcattcaaatgttgttcttcagcctgttctttagcccatcatgacaccatgta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaccacagcattcaaatgttgttcttcagcctgttctttagcccatcatgacaccatgta 468
Query: 540 ccttctcttgggtctctacaaagtctcatgggcacagatctccattcctttctggaggcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccttctcttgggtctctacaaagtctcatgggcacagatctccattcctttctggaggcc 408
Query: 600 agagagagaactctcaactagtactacaaagtcaaggcactctcctgtgccccatgtggc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agagagagaactctcaactagtactacaaagtcaaggcactctcctgtgccccatgtggc 348
Query: 660 acgtacaatgcactaggtgggg 681
||||||||||||||||||||||
Sbjct: 347 acgtacaatgcactaggtgggg 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_m04.g1 MSMg01no062_m04.g1 CHROMAT_FILE:
MSMg01no062_m04.g1 PHD_FILE: MSMg01no062_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:41 2005
(715 letters)
>mm_chr4_11899002_11900116
Length = 1115
Score = 1286 bits (665), Expect = 0.0
Identities = 698/709 (98%)
Strand = Plus / Plus
Query: 1 gggggccactatcattcgtgaaggattactgagggacatcttgtgccatgttgccttcat 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggggccactaacattcgtgaaggattactgagggacatcttgtgccatgttgccttcat 260
Query: 61 acgcgcactggatttaaacatgcttgagtttggcacccactgctgcttccagttccttta 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acgcgcactggatttaaacatgcttgagtttggcccccactgctgcttccagttccttta 320
Query: 121 tcttatagactaggagaatgaacatcagcaaatgtgatgacctggttcagtcttcttcca 180
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tcttacagactaggagaatgaacatcagcaaatgggatgacctggttcagtcttcttcca 380
Query: 181 atactccttccaatcgccagagctgccataatttcacccataaaacagtgtaccgcacaa 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ataccccttccaatcgccagagctgccataatttcacccataaaacagtgtacctcacaa 440
Query: 241 ctttaatgtcaaagtgaatgcaaaccttacctctaagtttgaattaaacctttcaacatg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ctttaatgtcaaagtgaatgcaaaccttacctctaagccagaattaaacctttcaacatg 500
Query: 301 ctactaaggagttaaagtaacaaacaaaacacaatatgttgttctctttgttagaaacaa 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ctactaaggagttaaagtaacaaacaaaacacaatatgttgttctcttcgttagaaacaa 560
Query: 361 ttgattataattttagttcccaacacttttaatgtgatagataatgtgcaaggaattaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgattataattttagttcccaacacttttaatgtgatagataatgtgcaaggaattaaa 620
Query: 421 agattttaatggtgctaccccttatgagaggaagtggtcagtgtactgagaatcccataa 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 agattttaatggtgctaccccttatgagaggaagttgtcagtgtactgagaatcccataa 680
Query: 481 gtaagtatttttgtggaatgtatttcttctgcattgctgaatggcagccagatttttgtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaagtatttttgtggaatgtatttcttctgcattgctgaatggcagccagatttttgtc 740
Query: 541 agaaaaataaattagaaaatgttgttttcctggtttcagggaacttctgggctcagtgtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaaaaataaattagaaaatgttgttttcctggtttcagggaacttctgggctcagtgtt 800
Query: 601 cagttttcagaccacaaatccatgattcatcaaaaaatgaccaggattaatgagcacaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagttttcagaccacaaatccatgattcatcaaaaaatgaccaggattaatgagcacaga 860
Query: 661 gtgtttcatttgctgctggctgtcaccctaccttttgatggttcctact 709
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtgtttcatttgctgctggctgtcaccctaccttttgatggttcctact 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
