BAC Information

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BAC

Clone NameMSMg01-062M05
Chromosome4 (Build37)
Map Location 110,329,928 - 110,330,655
singlet/doubletsinglet
Overlap genenone
Upstream geneCdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062M05.T7 (MSMg01no062_m05.b1)MSMg01-062M05.TJ (MSMg01no062_m05.g1)
ACCAG288661AG288662
length1,1441,191
length of high quality
(start - end)		759 (56 - 814)734 (81 - 814)
definitionCHROMAT_FILE: MSMg01no062_m05.b1 PHD_FILE: MSMg01no062_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:41 2005CHROMAT_FILE: MSMg01no062_m05.g1 PHD_FILE: MSMg01no062_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCATGTTGAGGNNNGATCAATGGGCGCTAXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCACCTGAGGAATACCCATTGAAAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTACTCATCAGGGAAATGCAAATCCAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGTTTGTACAACCACTCCGGAAATCAGTCTGGT
GGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
CTCACAATGGAGTACTACTCAGGTATTAAAAAGAATGAATTTATGAAATT
CCTAGTCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCC
ATTCACAAAGGAACTCACACAATATGTACTCAATGATAAGTGGATATTAG
CCCCAAACCTAGGATTCCCAAGATATAAGATACAATTTCCTAAACACATG
AAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAG
AAGTGGGAACAAAACACCCTTGGAAGGAGGTACAGAGACAAAGTTTGGAG
CTGAGATAAAAAGATGGACCATGTAGAGACTGCCATATCCGGGGATCCAT
CCCATTATCAGCTTCGAAATGCTGACACCATTGCATACACTAGCAAGATT
ATGCTGAAAGGACCCTGATATAGCTGTCTCTTGTCAGAGTATGCCTGGGC
CTAGCAAACGTAAAAGTGGAAGCTCACAGTCCGCTATTGGAAGGATCACA
TGGGCCCCCATGAATGAGCTTAAAGAAAGTCTCCCAAAAAAAAAAGGGTA
CGGCGACCCTCTTAGGGGGAAAAAATTTTTTTAATAAATTCTTTCCCCCG
AAAACTTTTTTTTTATTTTGTTTATTTTTTAAAAAAATGGCTCT

NCCCGATTATTTTNNNNAAGCATGGAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAAGGAGAATAATTT
TGCTGCTAGTGTCAAAGATAGCCTTTATAGTAGAATTTTACCTGATCTCA
ATAATGAGAGTAGCTGTTACTAAAAACTATTCTAACTGAACCAGCAGTGA
TATGATTATCAAGAATGCCAGGAAGACAGTAGTTACCTTTCCCTCGGTAA
TTAGAATGTTTTGCTAAGTATATAGGTATAGCTTTCTGAGTGAACTTATT
AAAATATATCAGAGGCTAAATATGAAGAAAAATAAATTCAACTGGCAAAT
CCTGTATCTGGTTGTTTGTTTTTCTTGTGTCTAACTTTTGGAATAGATGT
CTAGGTGGTTCTTATTTTCTTGGCCTCTGGTCATATAAGAGAAATGAAAG
AAGGGCATGCTGTTGGTAGTTTTTATTTAAACTGCTTTTAAGAAATCAAA
AAATCCATATCTTACATCCTGTGAAAACTCATTCTTGGCATTTCCATGGT
AACAAGACTTTTAAAAGGGAGTTAACTGAAATTTAGCTGCATATATTATT
TCTTTGTGATTCATACTTCATAAAAATGCAAATGTCACACTAATACATGT
TTTACCTTAACATTTTATACTTCCATTTATTCGTAATTGATCTAATGTTT
TCTTTAATTAAATTTTGTGCTTCCTTGAATGTTTTTTCTCCTCCTTTCCC
TACAGTGCTTTTTTTCCTGTGGTCCCATCAAACTATACATTTCTCTGGGT
GACATGCAATTTAGGAAACTGTCACATGGGAGATCAATCATCCCAGTCTA
GAAACTCAGCAGAAGGCTTCTGGAAAACTGTCCTGTCTCTCATTCATCTG
TTCCTTTACTTTTGGGAAATATTAGTATCTCCTTCGTTGCCCCTTGGCCA
AATTTTCCCCATTTGGCATTTTCCTCAAAATCTGAATCAGGCTATGGTTA
TGTTAAAAAAATTGCCCGTAATGTTTTGTGAAAAAAAATTTGGCCTTCTA
AATTTTTTTTAGTCTTCTTATACTTTGAGTAAATCTCTTTAATATTTTTT
AACCCTTTTTTTCTATTAATGGGGTATATCTCAAATCTATTTATATATCT
TTTTTTATTTTTAATATCTCTTTCAAACACTGTGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_m05.g1 MSMg01no062_m05.g1 CHROMAT_FILE:
MSMg01no062_m05.g1 PHD_FILE: MSMg01no062_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:42 2005
         (734 letters)



>mm_chr4_110329722_110330855
          Length = 1134

 Score = 1392 bits (720), Expect = 0.0
 Identities = 726/728 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   aaggagaataattttgctgctagtgtcaaagatagcctttatagtagaattttacctgat 66
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 207 aaggagaataattttgctgctagtgtcaaagatagcctttatagtagaattttaactgat 266

                                                                       
Query: 67  ctcaataatgagagtagctgttactaaaaactattctaactgaaccagcagtgatatgat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctcaataatgagagtagctgttactaaaaactattctaactgaaccagcagtgatatgat 326

                                                                       
Query: 127 tatcaagaatgccaggaagacagtagttacctttccctcggtaattagaatgttttgcta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatcaagaatgccaggaagacagtagttacctttccctcggtaattagaatgttttgcta 386

                                                                       
Query: 187 agtatataggtatagctttctgagtgaacttattaaaatatatcagaggctaaatatgaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtatataggtatagctttctgagtgaacttattaaaatatatcagaggctaaatatgaa 446

                                                                       
Query: 247 gaaaaataaattcaactggcaaatcctgtatctggttgtttgtttttcttgtgtctaact 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaaaaataaattcaactggcaaatcctgtatctggttgtttgtttttcttgtgtctaact 506

                                                                       
Query: 307 tttggaatagatgtctaggtggttcttattttcttggcctctggtcatataagagaaatg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttggaatagatgtctaggtggttcttattttcttggcctctggtcatataagagaaatg 566

                                                                       
Query: 367 aaagaagggcatgctgttggtagtttttatttaaactgcttttaagaaatcaaaaaatcc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaagaagggcatgctgttggtagtttttatttaaactgcttttaagaaatcaaaaaatcc 626

                                                                       
Query: 427 atatcttacatcctgtgaaaactcattcttggcatttccatggtaacaagacttttaaaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atatcttacatcctgtgaaaactcattcttggcatttccatggtaacaagacttttaaaa 686

                                                                       
Query: 487 gggagttaactgaaatttagctgcatatattatttctttgtgattcatacttcataaaaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gggagttaactgaaatttagctgcatatattatttctttgtgattcatacttcataaaaa 746

                                                                       
Query: 547 tgcaaatgtcacactaatacatgttttaccttaacattttatacttccatttattcgtaa 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgcaaatgtcacactaatacatgttttaccttaacattttatacttccatttattcgtaa 806

                                                                       
Query: 607 ttgatctaatgttttctttaattaaattttgtgcttccttgaatgttttttctcctcctt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 807 ttgatctaatgttttctttaattaaattttgtgcttccttgaatgttttttctcctcttt 866

                                                                       
Query: 667 tccctacagtgctttttttcctgtggtcccatcaaactatacatttctctgggtgacatg 726
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tccctacagtgctttttttcctgtggtcccatcaaactatacatttctctgggtgacatg 926

                   
Query: 727 caatttag 734
           ||||||||
Sbjct: 927 caatttag 934


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1134
Length adjustment: 10
Effective length of query: 724
Effective length of database: 1124
Effective search space:   813776
Effective search space used:   813776
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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