Query= MSMg01no062_o06.b1 MSMg01no062_o06.b1 CHROMAT_FILE:
MSMg01no062_o06.b1 PHD_FILE: MSMg01no062_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:57 2005
(550 letters)
>mm_chr4_78312336_78313285
Length = 950
Score = 934 bits (483), Expect = 0.0
Identities = 504/511 (98%), Gaps = 1/511 (0%)
Strand = Plus / Minus
Query: 36 tgattgcaagaaatattcgaaaaaattttctactatatcagaatgaattacttatttata 95
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct: 950 tgattgcaagaaatattcg-aaaaattttctagtatatcagaatgaattagttatttata 892
Query: 96 tgtgatatttagaaaagaaggaaaggtggctctttattcattagttctgtaaactttatt 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tgtgatatttagaaaagaaggaaaggtggctctttattcattagttctgtaaactttatt 832
Query: 156 tagatgggtaattgtcatgacaaaaacaaaaatcaaaaaaaccaaaaaacaaacaaacaa 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tagatgggtaattgtcatgacaaaaacaaaaatcaaaaaaaccaaaaaacaaacaaacaa 772
Query: 216 acaaaaaaccaaagcaaaccaaacataagataccaccaacaatacagaagtgctagggaa 275
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aaaaaaaaccaaagcaaaccaaacataagataccaccaacaatacagaagtgctagggaa 712
Query: 276 aagtgacttagaattcaagagtataaaatgctatgctgcctacaaagctcaaagttcaaa 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aagtgacttagaattcaagagtataaaatgctatgctgcctacaaagctcaaagttcaaa 652
Query: 336 ctggaatatcacacacctaatattgaggaatatttcctcaaaaagttcaacagctctata 395
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctggaatatcacacacctaaaattgaggaatatttcctcaaaaagttcaacagctctata 592
Query: 396 gaacaattctctaccatggagtttaaaatagagtaaatgtcctgaaagttattacttgtg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaacaattctctaccatggagtttaaaatagagtaaatgtcctgaaagttattacttgtg 532
Query: 456 ggaaatgctgttgactcaacttggtttctttattgaaggctctccaggactgtttaggca 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ggaaatgctgttgactcaacttggtttctttattgaaggctctccaggactgtttaggca 472
Query: 516 tccatatatgggaggggtggaagggagatgg 546
||||| |||||||||||||||| ||||||||
Sbjct: 471 tccatgtatgggaggggtggaacggagatgg 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_o06.g1 MSMg01no062_o06.g1 CHROMAT_FILE:
MSMg01no062_o06.g1 PHD_FILE: MSMg01no062_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:57 2005
(724 letters)
>mm_chr4_78252929_78254052
Length = 1124
Score = 1369 bits (708), Expect = 0.0
Identities = 720/724 (99%)
Strand = Plus / Plus
Query: 1 tgcagcttctttctccttatgccaaggaaatcttacatatagagttctcattgcaataat 60
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 201 tgcagcttctttctccttatgccaaggaaatcttaaatatagagttctcgttgcaataat 260
Query: 61 ggttcctttgatgagacttttcttggagtccttcctccttcagcctggggactgtctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttcctttgatgagacttttcttggagtccttcctccttcagcctggggactgtctgtt 320
Query: 121 ctgtttgaatatctttctttagagaagaccctcacttcagatattcttgaaagagttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtttgaatatctttctttagagaagaccctcacttcagatattcttgaaagagttttt 380
Query: 181 ttttttaacttgattttagttctcaatgtcttacttcagaagaaattctcctgaaaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttaacttgattttagttctcaatgtcttacttcagaagaaattctcctgaaaaata 440
Query: 241 tattttaatcaaacagaattacatcatttcctttctttctttcttttcactagcttctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttaatcaaacagaattacatcatttcctttctttctttcttttcactagcttctca 500
Query: 301 caagtagcatacccgtaaccactcctgcctctcaagctgaaaaccatttcttattcaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtagcatacccgtaaccactcctgcctctcaagctgaaaaccatttcttattcaatt 560
Query: 361 actcttttacatacatgcatgtagacgtgtacacaaatataaagcacagcttgctgactg 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 actcttttacatacatgcatgtagatgtgtacacaaatataaagcacagcttgctgactg 620
Query: 421 cacttttgttgttgttgtgtatatggtttcctaactagaaatcttcactcttttattttc 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactttttttgttgttgtgtatatggtttcctaactagaaatcttcactcttttattttc 680
Query: 481 atttttgtttgtttttgtttgttgtttgttttttatatttcaaacttctgtggcttttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttttgtttgtttttgtttgttgtttgttttttatatttcaaacttctgtggcttttgc 740
Query: 541 ttactgtgtagtaaaatgtctttttccccagtaaatgaatcatcgtcaacagtcagttcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttactgtgtagtaaaatgtctttttccccagtaaatgaatcatcgtcaacagtcagttcc 800
Query: 601 ccaggttaaataagtagaacaaagaatcacaagccttgcctctgctgagtttggagtcac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccaggttaaataagtagaacaaagaatcacaagccttgcctctgctgagtttggagtcac 860
Query: 661 actcacttgaccattggtcagagcattctacaaaacgatagtctgagaattcgaattgaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 actcacttgaccattggtcagagcattctacaaaacgatagtctgagaattcgaattgaa 920
Query: 721 tttt 724
||||
Sbjct: 921 tttt 924
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space: 795396
Effective search space used: 795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
