Query= MSMg01no063_b18.b1 MSMg01no063_b18.b1 CHROMAT_FILE:
MSMg01no063_b18.b1 PHD_FILE: MSMg01no063_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:20 2005
(641 letters)
>mm_chr4_63395826_63396861
Length = 1036
Score = 1168 bits (604), Expect = 0.0
Identities = 625/634 (98%), Gaps = 5/634 (0%)
Strand = Plus / Plus
Query: 8 gaattcttccaccatcacaaccctctgttcctgagtcacttcagatttcacatgatagaa 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcttccaccatcacaaccctctgttcctgagtcacttcagatttcacatgatagaa 267
Query: 68 gaaaagcaactgccttggtatcagatagacatgaatttggattgtggttctgtcctttgt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaaaagcaactgccttggtatcagatagacatgaatttggattgtggttctgtcctttgt 327
Query: 128 caatggtaagatcttgagaaagacacccttttctctgagtttagtgtacctactggagat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caatggtaagatcttgagaaagacacccttttctctgagtttagtgtacctactggagat 387
Query: 188 gctaacacccccaaacctaagtgacttgcagagttgaggtaaagatcaattaagaaaatg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gctaacacccccaaacctaagtgacttgcagagttgaggtaaagatcaattaagaaaatg 447
Query: 248 gcccagttagttggaaggacatgtgaaaatacaagaactaccattcacaggcttgagcac 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcccagttagttggaaggacatgtgaaaatacaagaactaccattcacaggcttgagcac 507
Query: 308 gagacgcatgatcaaggcaggcttccaacttactcacaatcatacaatcttttcacacac 367
|||||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 508 gagacgcaggagcaaggcaggcttccaacttac----aatcatacaatcttttcacacac 563
Query: 368 ttgcatgccttggcaagagaattctctgacttggatcttgtaattacacagcctccacta 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 ttgcatgccttggcaagagaattctctgacttggatcttgtaattacacagcctc-acta 622
Query: 428 acagattatttcttactaccatggacatctcatctatgtctacaacttaaaatctacatg 487
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 623 acagattatttcttactaccatggacatctcatctctgtctacaacttaaaatctacatg 682
Query: 488 ggcacagcacacacacgtgtgtgtatgtgtgtgtgtgtctgtgtgtgcttgtgactgagg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggcacagcacacacacgtgtgtgtatgtgtgtgtgtgtctgtgtgtgcttgtgactgagg 742
Query: 548 ggttgtaattgagtgcaaaagagaaggcttcaacccaggagagtgtgcaccaagatgtcc 607
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggttgtaactgagtgcaaaagagaaggcttcaacccaggagagtgtgcaccaagatgtcc 802
Query: 608 aggccctgcctcctgctctctgggtcttcctaca 641
||||||||||||||||||||||||||||||||||
Sbjct: 803 aggccctgcctcctgctctctgggtcttcctaca 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1036
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1026
Effective search space: 647406
Effective search space used: 647406
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_b18.g1 MSMg01no063_b18.g1 CHROMAT_FILE:
MSMg01no063_b18.g1 PHD_FILE: MSMg01no063_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:20 2005
(563 letters)
>mm_chr4_63507974_63508935
Length = 962
Score = 1050 bits (543), Expect = 0.0
Identities = 558/563 (99%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 1 tcttgtcctatatagaatgagagaaagaaatagcctgacagttgtctgaagaaaatctga 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tcttgtcctatatagaaagagagaaagaaatagcctgacagttgtctgaagaaaatctga 703
Query: 61 agccacaatctctttcaccaacaaactaatcttaagccaacacaagaaacaaattgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agccacaatctctttcaccaacaaactaatcttaagccaacacaagaaacaaattgccct 643
Query: 121 tttgggaaaggaaaagaagcaggcagggaaaaagagaacactgttgcaagacatcccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tttgggaaaggaaaagaagcaggcagggaaaaagagaacactgttgcaagacatcccagg 583
Query: 181 cagggcagacctactttccagaagttcctgggaggaagtcccagggatggcatgaggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cagggcagacctactttccagaagttcctgggaggaagtcccagggatggcatgaggttt 523
Query: 241 gtcacaaggacagaagctgcaaggattgcagctaccatgacagctgttgtaaccagccaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 522 gtcacaaggacagaagctgcaaggattgcagctaccatgacagctgttgtaaccag-gaa 464
Query: 301 accagcactgaccagagcctaggatgcagggctctgcacacatgctaagcacaggatatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 accagcactgaccagagcctaggatgcagggctctgcacacatgctaagcacaggatatc 404
Query: 361 cttagctacagggaaaccacagaaaaccacacccgtgttagtaatgagccctaacacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cttagctacagggaaaccacagaaaaccacacccgtgttagtaatgagccctaacacaaa 344
Query: 421 cttgtcattcctggccagaataggccccagtcaatggctgacttgcactcggcccactgt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 343 cttgtcattcctggccagaataggacccagtcaatggctgacttgcactcggcccactgt 284
Query: 481 gcttgaggcttgttagccattcagttgaatccatggacaaactggaaggctgggaggcaa 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 283 gcttgaggcttgttagccattcagttgaattcatggacaaactggaaggctgggaggcaa 224
Query: 541 gcctgtcctgtatgcttcgtgct 563
|||||||||||||||||||||||
Sbjct: 223 gcctgtcctgtatgcttcgtgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space: 526456
Effective search space used: 526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
