BAC Information

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BAC

Clone NameMSMg01-063B24
Chromosome4 (Build37)
Map Location 36,645,958 - 36,696,211
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B24.T7 (MSMg01no063_b24.b1)MSMg01-063B24.TJ (MSMg01no063_b24.g1)
ACCAG288938AG288939
length680681
length of high quality
(start - end)		559 (44 - 602)610 (72 - 681)
definitionCHROMAT_FILE: MSMg01no063_b24.b1 PHD_FILE: MSMg01no063_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:21 2005CHROMAT_FILE: MSMg01no063_b24.g1 PHD_FILE: MSMg01no063_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,695,657 - 36,696,211)(36,645,958 - 36,646,567)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTTGTTTCATTATTATAATATAGAACACTTAATACAGATTTAGAGC
ATATGTTAGTATAATCAAGTTATTGAATTTTGGAACAGCTATTTATGTAA
TAAATATTCTTTACCTTTCGAGTTTCAATTCTTTAACACTTGATTTTTAT
TTCCGTATTACTGCACAGTCCTTCTTATGTGACACTCATTTGATGCTGGT
TTTATTACATAATAAAACGTGTTAAACCTTCAAAATTAACTTTTTAGTCT
TCCTTATATAAGACAAAGAAGCTTGTTTAATTAGTAAATTTTCATATGAT
TTTATATAATACTGAAGCTATGAATATTCATGTCAAGTATCATGTCATAA
GCATCTTAGACTTTTTGCTCTCTATAAGGTCTGTTAAATATTCTTCCTAA
TTTTTATGACTATTTAAAACATTTTAGTTCATATATTGAAAGTATATTTG
TTTTCATATCATATATTCTGTTTACAGTTTTCCCTCCTGAAAGTCCTCTC
CGCTCTGCCCCATGTTCCCTCCCATCCATATTCACACTCTCCTCAGAAAT
CAAACATGCATCTAAAGAATAACAATGAAATGAGCTAACAACAAACAAAT
TGGTATAGAAAAATGAACAAAGAAACAGAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAACACACACTTTAAGCACAATGTCTAA
AGTAAAAGGACTATCCTAAGCTATGCATGATGAAGAGAGAAAGATTGCAG
CGTAAAGCAGAAAGAAGTAAACACTGTAATCTAAATGGAAAACATCAGAA
TTCTCTACCCTTGCCACAGTGATATGGAGATGTGCCCTTTATCTATTGCT
GGCTTAGGTGTTAGAACACCGAGAATATTAGCTCCCTCTTCTAGCTCAGC
TAACATCTAACTATACTGTGTGCAAAAACGACTAACCTAAATATACATGT
GGCATTCTATGGCAAAATCTTTTAACAAATTGATCTTGGAAATTTAGTCT
GCCTGCTGAAAATCCAGACAAATTTCACTTTTTAACTTAACAGCTTTTCT
TGTGATCCAGGCAAAAGGATGCCCCTTTCACTCACACTTCCTGTTTTCCT
TACAGGGTGTATGTGTCCCCTCAATGAGAAAACTTCCCTTGCTCTTCCTC
AAAACTAGCACTCAGATATTCCTGTCTAGCAGCTCTTATCTTTTCAAGGA
CACACCACTGTTAACTGTCCACCCCTAATTTTGTCAACATGTACTAACCT
TTGTCTTTCAAAATGGATTCAAAATTATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b24.b1 MSMg01no063_b24.b1 CHROMAT_FILE:
MSMg01no063_b24.b1 PHD_FILE: MSMg01no063_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:21 2005
         (559 letters)



>mm_chr4_36695572_36696530
          Length = 959

 Score = 1058 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgttgtttcattattataatatagaacacttaatacagatttagagcatatgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaattctgttgtttcattattataatatagaacacttaatacagatttagagcatatgtt 581

                                                                       
Query: 65  agtataatcaagttattgaattttggaacagctatttatgtaataaatattctttacctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agtataatcaagttattgaattttggaacagctatttatgtaataaatattctttacctt 521

                                                                       
Query: 125 tcgagtttcaattctttaacacttgatttttatttccgtattactgcacagtccttctta 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 520 tcgagtttcaattctttaacacttgatttttatttccgtagtactgcacagtccttctta 461

                                                                       
Query: 185 tgtgacactcatttgatgctggttttattacataataaaacgtgttaaaccttcaaaatt 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgtgacactcacttgatgctggttttattacataataaaacgtgttaaaccttcaaaatt 401

                                                                       
Query: 245 aactttttagtcttccttatataagacaaagaagcttgtttaattagtaaattttcatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aactttttagtcttccttatataagacaaagaagcttgtttaattagtaaattttcatat 341

                                                                       
Query: 305 gattttatataatactgaagctatgaatattcatgtcaagtatcatgtcataagcatctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gattttatataatactgaagctatgaatattcatgtcaagtatcatgtcataagcatctt 281

                                                                       
Query: 365 agactttttgctctctataaggtctgttaaatattcttcctaatttttatgactatttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agactttttgctctctataaggtctgttaaatattcttcctaatttttatgactatttaa 221

                                                                       
Query: 425 aacattttagttcatatattgaaagtatatttgttttcatatcatatattctgtttacag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aacattttagttcatatattgaaagtatatttgttttcatatcatatattctgtttacag 161

                                                                       
Query: 485 ttttccctcctgaaagtcctctccgctctgccccatgttccctcccatccatattcacac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ttttccctcctgaaagtcctctccgctctgccccatgttccctcccatccatattcacac 101

                          
Query: 545 tctcctcagaaatca 559
           |||||||||||||||
Sbjct: 100 tctcctcagaaatca 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no063_b24.g1 MSMg01no063_b24.g1 CHROMAT_FILE:
MSMg01no063_b24.g1 PHD_FILE: MSMg01no063_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:21 2005
         (610 letters)



>mm_chr4_36645758_36646767
          Length = 1010

 Score = 1149 bits (594), Expect = 0.0
 Identities = 606/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacacacactttaagcacaatgtctaaagtaaaaggactatcctaagctatgcatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaacacacactttaagcacaatgtctaaagtaaaaggactatcctaagctatgcatgat 260

                                                                       
Query: 61  gaagagagaaagattgcagcgtaaagcagaaagaagtaaacactgtaatctaaatggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagagaaagattgcagcgtaaagcagaaagaagtaaacactgtaatctaaatggaaa 320

                                                                       
Query: 121 acatcagaattctctacccttgccacagtgatatggagatgtgccctttatctattgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcagaattctctacccttgccacagtgatatggagatgtgccctttatctattgctg 380

                                                                       
Query: 181 gcttaggtgttagaacaccgagaatattagctccctcttctagctcagctaacatctaac 240
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 gcttaggtgttagaacacccagaatattagctccctcttctagctcggctaacatctaac 440

                                                                       
Query: 241 tatactgtgtgcaaaaacgactaacctaaatatacatgtggcattctatggcaaaatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatactgtgtgcaaaaacgactaacctaaatatacatgtggcattctatggcaaaatctt 500

                                                                       
Query: 301 ttaacaaattgatcttggaaatttagtctgcctgctgaaaatccagacaaatttcacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaacaaattgatcttggaaatttagtctgcctgctgaaaatccagacaaatttcacttt 560

                                                                       
Query: 361 ttaacttaacagcttttcttgtgatccaggcaaaaggatgcccctttcactcacacttcc 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacttaacagcttgtcttgtgatccaggcaaaaggatgcccctttcactcacacttcc 620

                                                                       
Query: 421 tgttttccttacagggtgtatgtgtcccctcaatgagaaaacttcccttgctcttcctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttttccttacagggtgtatgtgtcccctcaatgagaaaacttcccttgctcttcctca 680

                                                                       
Query: 481 aaactagcactcagatattcctgtctagcagctcttatcttttcaaggacacaccactgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactagcactcagatattcctgtctagcagctcttatcttttcaaggacacaccactgt 740

                                                                       
Query: 541 taactgtccacccctaattttgtcaacatgtactaacctttgtctttcaaaatggattca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taactgtccacccctaattttgtcaacatgtactaacctttgtctttcaaaatggattca 800

                     
Query: 601 aaattattga 610
           || |||||||
Sbjct: 801 aatttattga 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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