Query= MSMg01no063_g05.b1 MSMg01no063_g05.b1 CHROMAT_FILE:
MSMg01no063_g05.b1 PHD_FILE: MSMg01no063_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
(622 letters)
>mm_chr4_30594789_30595810
Length = 1022
Score = 940 bits (486), Expect = 0.0
Identities = 557/598 (93%), Gaps = 32/598 (5%)
Strand = Plus / Minus
Query: 7 gaattcctgaaaa-tacctttaagtgcatagatttatttacagagatctctatgtcaaat 65
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaattcctgaaaagtagctttaagtgcatagatttatttacagagatctctatgtcaaat 532
Query: 66 atgtccaagatttgttttaattaaaata------------tcctg------------tgt 101
|||||||||||||||||||||||||||| | || |||
Sbjct: 531 atgtccaagatttgttttaattaaaataattaaattaaatt--tgttttaattaaaatgt 474
Query: 102 tgactaacttattaaacccttaggctttaatgtataccctaaaattgtctcctattttca 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgactaacttattaaacccttaggctttaatgtataccctaaaattgtctcctattttca 414
Query: 162 tatcccatagaaaaaaatgcctatcattaagttgaaggtatgtttccttcaatgtcttac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatcccatagaaaaaaatgcctatcattaagttgaaggtatgtttccttcaatgtcttac 354
Query: 222 accttttaataataaacaagtacttagtcatttgtgatcaaggcaaattcttggaaaaac 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 accttttaataataaacaagtacttagtcatttgtgatcaaggcaaattcttggaaaaac 294
Query: 282 aaaacaaaacaaaacaaaacaaaaacaaacactatgcatgaactctagctaacacatcca 341
|||||||||||||||| |||| |||| ||| |||||||||||||||||| | |||||
Sbjct: 293 aaaacaaaacaaaaca----aaaaccaaa-actgtgcatgaactctagctaaaagatcca 239
Query: 342 gtggggatgaaggatgaacatgtcagcagtgtagaaagaatcacaggagcagggtcagtt 401
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 238 gtggggatgaaggatgaacatgtcagcagtgtagaaagaatcataggagcagggtcagtt 179
Query: 402 taccagcaacatctgatagagtgttaacctccacagaaatgtgaaggacaagatggctgt 461
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 178 tatcagcaacatctgatagagcattaacctccacagaaatgtgaaggacaagatggctgt 119
Query: 462 ttttctacattttacattcacaattttactaaatgaaaattttctgtgactttaagtttc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttttctacattttacattcacaattttactaaatgaaaattttctgtgactttaagtttc 59
Query: 522 agaccttattcatctgcttagtttatctgaactgctcaaggtagttttcaaacaaaga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 agaccttattcatctgcttagtttatctgaactgctcaaggtagttttcaaacaaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_g05.g1 MSMg01no063_g05.g1 CHROMAT_FILE:
MSMg01no063_g05.g1 PHD_FILE: MSMg01no063_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:43 2005
(517 letters)
>mm_chr4_30426274_30427191
Length = 918
Score = 955 bits (494), Expect = 0.0
Identities = 512/518 (98%), Gaps = 1/518 (0%)
Strand = Plus / Plus
Query: 1 cttgccctaagcttcctgcaagccactaactgccatctctggaaccacttctctcctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgccctaagcttcctgcaagccactaactgccatctctggaaccacttctctcctgca 260
Query: 61 gcagcttcgctgaggttagttttctcaaaggtgtttttacaaagtcctcctctcatatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcttcgctgaggttagttttctcaaaggtgtttttacaaagtcctcctctcatatta 320
Query: 121 tttttccttcatgtctctactgactctgaggataactttgcatatcccaaatctcattaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttccttcatgtctctactgactctgaggataactttgcatatcccaaatctcattaa 380
Query: 181 ctctgtctaccacatactttgtcatttcacaaaggcccatggagacttacaaaagattac 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ctctgtctaccacatactttgtcatttcacaaaggctcatggagacttacaaaagattac 440
Query: 241 ctgctcattgagggaatacactgtttcacttgtaaggcagaagccactattatactcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctcattgagggaatacactgtttcacttgtaaggcagaagccactattatactcttc 500
Query: 301 ctattgatatatctactatatgttaaaaaa-tctatgttgtagctattaaaatttcctgg 359
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 atattgatatatctactatatgttaaaaaaatctatgttgtagctattaaaatttcctgg 560
Query: 360 atttctgtttattacaacgaaggtcttattattattttagtttttgcaggacttttctta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttctgtttattacaacgaaggtcttattattattttagtttttgcaggacttttctta 620
Query: 420 gttcagttgtgcttcaatctgaaacttggattccagacacctaggtcactaaaggtcatc 479
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccagttgtgcttgaatctgaaacttggattccagacacctaggtcactaaaggtcatc 680
Query: 480 tgtggacagtggcccctgaataggctgtctcatagcaa 517
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtggacagtggcccctgaataggctgtctcatagcaa 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
