BAC Information

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BAC

Clone NameMSMg01-063O07
Chromosome4 (Build37)
Map Location 32,854,573 - 32,854,738
singlet/doubletsinglet
Overlap geneMdn1
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2
Downstream geneLyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063O07.T7 (MSMg01no063_o07.b1)MSMg01-063O07.TJ (MSMg01no063_o07.g1)
ACCAG289516AG289517
length852759
length of high quality
(start - end)
171 (129 - 299)267 (136 - 402)
definitionCHROMAT_FILE: MSMg01no063_o07.b1 PHD_FILE: MSMg01no063_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:26 2005CHROMAT_FILE: MSMg01no063_o07.g1 PHD_FILE: MSMg01no063_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNTTTT
NNCCCTTTTCNNNNCCCCCCCCTCNNTNNNCCCATCTATXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCAATACCCT
TGCTCCTGCCAGTTTAAGAACTGGACCTGATACTTTGCACAGCGGCATGG
GAATGTGAACTCTGGGCAAAGCTCAAGTACCTGAGCGCGCTCATTAGTTT
TCAAGAGGGAGAGTGACAGTGTACACAAATCCCCCTCAACAGCAGGGAAT
CCTACCACACTACTAATAGGCCTCTCATACCTGCACTACAGACTTGAGCA
CGGCAACACCATGCCGTGGGTAAGGGAAGCAAACGGGCCTCCCCTCCACC
ACCCCCGCAAAATTATGCTCTGCCTTATCCCCCCCCTCATATTATTTTTT
TTCCTTTTAACAGGGGCCCAACTAATTCCCCTTCCCTATACCCCACAAAA
CCCTTCCACTTCATTCTTACCTATTAACCACTCCCCCCTCTATCTTCTTT
TCTTAATAACGTTCGATCCTTTCTCCTTCCCCCCCCCTCTCCTTCTTTTC
CGTATTAATATACTCTCCCAAATCTAGCCTATACCCATTACCATTTTTCT
TATCGCTTGCCGTTCTATTGTCTTTTTCTCCTTACTCTTCTTTTCTCCTN
NCGCNNNNNNNNNNNNAAGGNNNNNNNNNNNNNNNNNNNNNNNNNCAATA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGTNNNNNNNCNNNNNNNN
NNNNNNNNNNNNNNNNNATCNNNNAAGGGGNNNCNNTCTACCCNAAGCCN
NG
NCCCCNNNNNNNNNNNNNNNNNTTTTCCCCNNNNNNCCCCNNNNNNCCCC
CCCCCCNNCCTCAATGATATGCGTAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATCAATTTATA
ATTGTTCATTTAAGTTCTGAGTCCTTTGGTTTATCTCTACAGGACTAATA
GGTTTGGAGCTAAGATACTGTTTTGATTTCTTTTTTGTTTTTTTTCAAGA
CAGGGTTTTTCTGTGAAGCTCTGGCTGTCCTAGATCTCACTCTGTAGACC
AGGCTGTCCTCGAACTTAGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTG
GGATTAAAGGCGGTTGCCACCACCACCTAGCTCTGTTTTGATTTCTTACG
TTGCTATTTTTGATTTTTTATCTACCCCCCCCCCCCTCTGTGTCTGATAT
ACACTGAATACAGAATGTGTCTTGCACCTACAAAACCACCATATTTAGCC
GGATTTGCTTTGAATGATGTCTGGTGCCCTTATATTACCCCACTGCTATA
CAGGGTGCGTCTTCTTGTTCCCGCCCCCGCTCTGTGCTTGCTTTCCCTAA
CTGTACGTTTTGCCCCTAAACGCGACATGTCTAAAATCCCTGTTGCAGTT
CTACATGTTTGCCCTCTCCCCAATCTTTTTCCTCTTCCCCCCTGCAACCT
CCCCTCCCCCCCATGTTCCCTTTCTTTTATTCTCTTTCTCTCCTCTTCTT
CCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_o07.b1 MSMg01no063_o07.b1 CHROMAT_FILE:
MSMg01no063_o07.b1 PHD_FILE: MSMg01no063_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:26 2005
         (171 letters)



>mm_chr4_32854370_32854939
          Length = 570

 Score =  294 bits (152), Expect = 2e-84
 Identities = 163/170 (95%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactcaa---tacccttgctcctgccagtttaagaactggacctgatactttgc 60
           |||||||||||||   |    |||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaattcactcaacagt----ttgctcctgccagtttaagaactggacctgatactttgc 314

                                                                       
Query: 61  acagcggcatgggaatgtgaactctgggcaaagctcaagtacctgagcgcgctcattagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acagcggcatgggaatgtgaactctgggcaaagctcaagtacctgagcgcgctcattagt 254

                                                             
Query: 121 tttcaagagggagagtgacagtgtacacaaatccccctcaacagcaggga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttcaagagggagagtgacagtgtacacaaatccccctcaacagcaggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 570
Length adjustment: 8
Effective length of query: 163
Effective length of database: 562
Effective search space:    91606
Effective search space used:    91606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)