MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-065A17
Chromosome	4 (Build37)
Map Location	105,283,338 - 105,283,564
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Dab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381
Downstream gene	Ppia-ps4_954.1, Map1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111
Link	Open Mouse BAC browser

Click to get alignment info.

name	Dab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13131 MGI:108554
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	C8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110382 MGI:88236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C8a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230558 MGI:2668347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700024P16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242594 MGI:2685466
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein

name	Prkaa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108079 MGI:1336173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039513 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039513
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Ppap2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67916 MGI:1915166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433742 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 13 Proteins pseudo : _no_value

name	LOC665518 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665518
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC434381 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434381
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 651 ESTs pseudo : _no_value

name	Ppia-ps4_954.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:269569
definition	note : peptidyl-prolyl cis-trans isomerase A pseudogene 4_954.1 pseudo : _no_value

name	Map1lc3 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384038
definition	note : similar to microtubule-associated protein 1 light chain 3 beta pseudo : _no_value

name	LOC384039 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 15 Proteins pseudo : _no_value

name	Usp24 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329908 MGI:1919936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 166 ESTs, 2 Proteins

name	LOC100039616 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 100 ESTs, 1 Protein

name	Pcsk9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100102 MGI:2140260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bsnd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140475 MGI:2153465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem61 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329909 MGI:3041156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein

name	Dhcr24 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74754 MGI:1922004
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC055111 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242602 MGI:2681853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909365 GeneID:13131 MGI:108554
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : disabled homolog 1 (Drosophila) transcript_id : NM_010014.2

name	Dab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909360 GeneID:13131 MGI:108554
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : disabled homolog 1 (Drosophila) transcript_id : NM_177259.3

name	C8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381481 GeneID:110382 MGI:88236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 8, beta subunit transcript_id : NM_133882.2

name	C8a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122666 GeneID:230558 MGI:2668347
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 8, alpha polypeptide transcript_id : NM_146148.1

name	1700024P16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372162 GeneID:242594 MGI:2685466
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein product : RIKEN cDNA 1700024P16 gene transcript_id : XM_161350.7

name	Prkaa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54792085 GeneID:108079 MGI:1336173
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, AMP-activated, alpha 2 catalytic subunit transcript_id : NM_178143.1

name	LOC100039513 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252809 GeneID:100039513
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100039513 transcript_id : XM_001473391.1

name	Ppap2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86262159 GeneID:67916 MGI:1915166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidic acid phosphatase type 2B transcript_id : NM_080555.2

name	Usp24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252835 GeneID:329908 MGI:1919936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 166 ESTs, 2 Proteins product : ubiquitin specific peptidase 24 transcript_id : XM_001481281.1

name	LOC100039616 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252812 GeneID:100039616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 100 ESTs, 1 Protein product : similar to Usp24 protein transcript_id : XM_001473472.1

name	Pcsk9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956351 GeneID:100102 MGI:2140260
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proprotein convertase subtilisin/kexin type 9 transcript_id : NM_153565.1

name	Bsnd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91598893 GeneID:140475 MGI:2153465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bartter syndrome, infantile, with sensorineural deafness (Barttin) transcript_id : NM_080458.2

name	Tmem61 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252837 GeneID:329909 MGI:3041156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : transmembrane protein 61 transcript_id : XM_001474114.1

name	Dhcr24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114155128 GeneID:74754 MGI:1922004
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 24-dehydrocholesterol reductase transcript_id : NM_053272.2

name	BC055111 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801289 GeneID:242602 MGI:2681853
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC055111 transcript_id : NM_183182.2

name	Dab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909361 CCDS:CCDS18413.1 GeneID:13131 MGI:108554
definition	GO_component : GO:0005622 - intracellular [Evidence TAS] GO_function : GO:0005543 - phospholipid binding [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0042169 - SH2 domain binding [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007417 - central nervous system development [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0007162 - negative regulation of cell adhesion [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045860 - positive regulation of protein kinase activity [Evidence IGI]; GO:0007243 - protein kinase cascade [Evidence TAS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; yotari product : disabled homolog 1 isoform 2 protein_id : NP_796233.2

name	Dab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753596 GeneID:13131 MGI:108554
definition	GO_component : GO:0005622 - intracellular [Evidence TAS] GO_function : GO:0005543 - phospholipid binding [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0042169 - SH2 domain binding [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007417 - central nervous system development [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0007162 - negative regulation of cell adhesion [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045860 - positive regulation of protein kinase activity [Evidence IGI]; GO:0007243 - protein kinase cascade [Evidence TAS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; yotari product : disabled homolog 1 isoform 1 protein_id : NP_034144.1

name	C8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563297 CCDS:CCDS18414.1 GeneID:110382 MGI:88236
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : complement component 8, beta subunit protein_id : NP_598643.1

name	C8a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122667 CCDS:CCDS18415.1 GeneID:230558 MGI:2668347
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005579 - membrane attack complex [Evidence IEA] [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006956 - complement activation [Evidence ISS]; GO:0006957 - complement activation, alternative pathway [Evidence IEA]; GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0019835 - cytolysis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 note : complement component 8 alpha subunit product : complement component 8, alpha polypeptide protein_id : NP_666260.1

name	1700024P16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51709364 GeneID:242594 MGI:2685466
definition	codon_start : 1 product : hypothetical protein protein_id : XP_161350.5

name	Prkaa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54792086 CCDS:CCDS18416.1 GeneID:108079 MGI:1336173
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004679 - AMP-activated protein kinase activity [Evidence TAS]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006950 - response to stress [Evidence TAS] codon_start : 1 exception : mismatches in translation product : AMP-activated protein kinase alpha 2 catalytic subunit protein_id : NP_835279.1

name	LOC100039513 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252810 GeneID:100039513
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473441.1

name	Ppap2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18017590 CCDS:CCDS18417.1 GeneID:67916 MGI:1915166
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0042577 - lipid phosphatase activity [Evidence IMP]; GO:0008195 - phosphatidate phosphatase activity [Evidence IEA] GO_process : GO:0001568 - blood vessel development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0006644 - phospholipid metabolism [Evidence IMP]; GO:0030111 - regulation of Wnt receptor signaling pathway [Evidence IDA] codon_start : 1 product : phosphatidic acid phosphatase type 2B protein_id : NP_542122.1

name	Usp24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252836 GeneID:329908 MGI:1919936
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to ubiquitin specific protease 24 protein_id : XP_001481331.1 transl_except : (pos:106036879..106036881,aa:OTHER) transl_except : (pos:106036897..106036899,aa:OTHER) transl_except : (pos:106036948..106036950,aa:OTHER) transl_except : (pos:106040711..106040713,aa:OTHER) transl_except : (pos:106041344..106041346,aa:OTHER) transl_except : (pos:106041362..106041364,aa:OTHER) transl_except : (pos:106041374..106041376,aa:OTHER) transl_except : (pos:106041434..106041436,aa:OTHER) transl_except : (pos:106041443..106041445,aa:OTHER) transl_except : (pos:106042678..106042680,aa:OTHER) transl_except : (pos:106042690..106042692,aa:OTHER) transl_except : (pos:106042771..106042773,aa:OTHER) transl_except : (pos:106042795..106042797,aa:OTHER) transl_except : (pos:106043668..106043670,aa:OTHER) transl_except : (pos:106043695..106043697,aa:OTHER) transl_except : (pos:106045326..106045328,aa:OTHER) transl_except : (pos:106045347..106045349,aa:OTHER) transl_except : (pos:106046268..106046270,aa:OTHER) transl_except : (pos:106046286..106046288,aa:OTHER) transl_except : (pos:106046358..106046360,aa:OTHER) transl_except : (pos:106046364..106046366,aa:OTHER) transl_except : (pos:106046385..106046387,aa:OTHER) transl_except : (pos:106046397..106046399,aa:OTHER) transl_except : (pos:106046645..106046647,aa:OTHER) transl_except : (pos:106048283..106048285,aa:OTHER) transl_except : (pos:106048295..106048297,aa:OTHER) transl_except : (pos:106048340..106048342,aa:OTHER) transl_except : (pos:106049948..106049950,aa:OTHER) transl_except : (pos:106049951..106049953,aa:OTHER) transl_except : (pos:106049987..106049989,aa:OTHER) transl_except : (pos:106049996..106049998,aa:OTHER) transl_except : (pos:106050175..106050177,aa:OTHER) transl_except : (pos:106050220..106050222,aa:OTHER) transl_except : (pos:106051663..106051665,aa:OTHER) transl_except : (pos:106051684..106051686,aa:OTHER) transl_except : (pos:106051835..106051837,aa:OTHER) transl_except : (pos:106051841..106051843,aa:OTHER) transl_except : (pos:106051901..106051903,aa:OTHER) transl_except : (pos:106052696..106052698,aa:OTHER) transl_except : (pos:106053035..106053037,aa:OTHER) transl_except : (pos:106053065..106053067,aa:OTHER) transl_except : (pos:106053116..106053118,aa:OTHER) transl_except : (pos:106058032..106058034,aa:OTHER) transl_except : (pos:106058122..106058124,aa:OTHER) transl_except : (pos:106060092..106060094,aa:OTHER) transl_except : (pos:106060330..106060332,aa:OTHER) transl_except : (pos:106060357..106060359,aa:OTHER) transl_except : (pos:106061137..106061139,aa:OTHER) transl_except : (pos:106061149..106061151,aa:OTHER) transl_except : (pos:106062891..106062893,aa:OTHER) transl_except : (pos:106069865..106069867,aa:OTHER) transl_except : (pos:106069916..106069918,aa:OTHER) transl_except : (pos:106071702..106071704,aa:OTHER) transl_except : (pos:106071711..106071713,aa:OTHER) transl_except : (pos:106073594..106073596,aa:OTHER) transl_except : (pos:106074654..106074656,aa:OTHER) transl_except : (pos:106074669..106074671,aa:OTHER) transl_except : (pos:106074705..106074707,aa:OTHER) transl_except : (pos:106076540..106076542,aa:OTHER) transl_except : (pos:106076573..106076575,aa:OTHER) transl_except : (pos:106076579..106076581,aa:OTHER) transl_except : (pos:106079042..106079044,aa:OTHER) transl_except : (pos:106079069..106079071,aa:OTHER) transl_except : (pos:106079697..106079699,aa:OTHER) transl_except : (pos:106080573..106080575,aa:OTHER) transl_except : (pos:106081924..106081926,aa:OTHER) transl_except : (pos:106081987..106081989,aa:OTHER) transl_except : (pos:106082220..106082222,aa:OTHER) transl_except : (pos:106082226..106082228,aa:OTHER) transl_except : (pos:106082265..106082267,aa:OTHER) transl_except : (pos:106082274..106082276,aa:OTHER) transl_except : (pos:106082277..106082279,aa:OTHER) transl_except : (pos:106082750..106082752,aa:OTHER) transl_except : (pos:106083448..106083450,aa:OTHER) transl_except : (pos:106084010..106084012,aa:OTHER) transl_except : (pos:106084019..106084021,aa:OTHER) transl_except : (pos:106084777..106084779,aa:OTHER) transl_except : (pos:106086212..106086214,aa:OTHER) transl_except : (pos:106086263..106086265,aa:OTHER) transl_except : (pos:106086272..106086274,aa:OTHER) transl_except : (pos:106086987..106086989,aa:OTHER) transl_except : (pos:106087020..106087022,aa:OTHER) transl_except : (pos:106088683..106088685,aa:OTHER) transl_except : (pos:106090820..106090822,aa:OTHER) transl_except : (pos:106090865..106090867,aa:OTHER) transl_except : (pos:106093040..106093042,aa:OTHER) transl_except : (pos:106093616..106093618,aa:OTHER) transl_except : (pos:106097985..106097987,aa:OTHER) transl_except : (pos:106098027..106098029,aa:OTHER) transl_except : (pos:106101100..106101102,aa:OTHER) transl_except : (pos:106101124..106101126,aa:OTHER) transl_except : (pos:106103152..106103154,aa:OTHER) transl_except : (pos:106103194..106103196,aa:OTHER) transl_except : (pos:106104222..106104224,aa:OTHER) transl_except : (pos:106109357..106109359,aa:OTHER) transl_except : (pos:106109378..106109380,aa:OTHER) transl_except : (pos:106111398..106111400,aa:OTHER) transl_except : (pos:106111401..106111403,aa:OTHER) transl_except : (pos:106111413..106111415,aa:OTHER)

name	LOC100039616 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252813 GeneID:100039616
definition	codon_start : 1 product : similar to Usp24 protein protein_id : XP_001473522.1

name	Pcsk9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956352 CCDS:CCDS18418.1 GeneID:100102 MGI:2140260
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0004289 - subtilase activity [Evidence IDA] GO_process : GO:0008203 - cholesterol metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0043086 - negative regulation of enzyme activity [Evidence IEA]; GO:0030182 - neuron differentiation [Evidence IDA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0008202 - steroid metabolism [Evidence IEA] codon_start : 1 note : convertase subtilisin; neural apoptosis regulated convertase 1 product : proprotein convertase subtilisin/kexin type 9 protein_id : NP_705793.1

name	Bsnd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91598894 CCDS:CCDS18419.1 GeneID:140475 MGI:2153465
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043234 - protein complex [Evidence IDA] GO_function : GO:0005254 - chloride channel activity [Evidence IDA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006873 - cell ion homeostasis [Evidence ISS]; GO:0030644 - chloride ion homeostasis [Evidence NAS]; GO:0030007 - potassium ion homeostasis [Evidence NAS]; GO:0007605 - sensory perception of sound [Evidence NAS] codon_start : 1 note : barttin product : Bartter syndrome, infantile, with sensorineural deafness (Barttin) protein_id : NP_536706.2

name	Tmem61 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252838 GeneID:329909 MGI:3041156
definition	codon_start : 1 product : similar to Transmembrane protein 61 protein_id : XP_001474164.1

name	Dhcr24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114155129 CCDS:CCDS18420.1 GeneID:74754 MGI:1922004
definition	GO_function : GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [Evidence ISS] GO_process : GO:0042987 - amyloid precursor protein catabolism [Evidence IMP]; GO:0006695 - cholesterol biosynthesis [Evidence ISS] [Evidence IMP]; GO:0008203 - cholesterol metabolism [Evidence IMP]; GO:0006118 - electron transport [Evidence IEA]; GO:0030539 - male genitalia development [Evidence IMP]; GO:0016044 - membrane organization and biogenesis [Evidence IMP]; GO:0031639 - plasminogen activation [Evidence IMP]; GO:0008104 - protein localization [Evidence IMP]; GO:0043588 - skin development [Evidence ISS]; GO:0016125 - sterol metabolism [Evidence IMP]; GO:0009888 - tissue development [Evidence IMP] codon_start : 1 note : seladin-1; 3-beta-hydroxysterol delta-24 reductase product : 24-dehydrocholesterol reductase precursor protein_id : NP_444502.2

name	BC055111 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147230 GeneID:242602 MGI:2681853
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC242602 protein_id : NP_899005.1

name	LOC665518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665518
definition	number : 1 pseudo : _no_value

name	LOC433742 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252831 GeneID:433742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 13 Proteins product : similar to ubiquitin-conjugating enzyme UbcH6 pseudo : _no_value transcript_id : XR_031474.1

name	LOC434381 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252811 GeneID:434381
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 651 ESTs product : hypothetical LOC434381 pseudo : _no_value transcript_id : XR_031223.1

name	LOC384039 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252834 GeneID:384039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 15 Proteins product : similar to Heat shock protein 1 (chaperonin) pseudo : _no_value transcript_id : XR_031555.1

clone name	MSMg01-416E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105A04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-112B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132H12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-089N22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-159K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241B14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-065A17.T7 (MSMg01no065_a17.b1)	MSMg01-065A17.TJ (MSMg01no065_a17.g1)
ACC	AG290347	AG290348
length	722	684
length of high quality (start - end)	300 (43 - 342)	541 (70 - 610)
definition	CHROMAT_FILE: MSMg01no065_a17.b1 PHD_FILE: MSMg01no065_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:26 2005	CHROMAT_FILE: MSMg01no065_a17.g1 PHD_FILE: MSMg01no065_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:26 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT TCTTTGTTCTTTCTGGCTGCATCTGTTAGAAACCAGGTGCTCTCCCAGAC TGCCTCAGTGCCAGCCGCTATGACATCACCAGCCACCAAACTCCACAAGA GTACCCTTTAAAGGGTCCCCACCATCATACCCATTCTCTGTTTCCTGGTC TGTCTGTCCCTCACTCTGTCCCTCTTTGTGTCTTTGTCTTCTCTCTCTCT CTCTTTCTCTCTCTCTCTCTCTCCATATATATATATATGTGTGTGTGTGT GTGTGTGTGTGTGTGTTTATATATATATATATATATATATATACATATAC ACACACACACATACACACATATATATATATATATAGAAATATAGATTAGA GAGAGAGAGATACACACATAAATAAATCATAATGAGATAGTTTGTTGTAT AGAATTGATACATACTATTATATTTACATCATTTTAATGCTTGGTATTAT TTTTTAAATATTTTACTTTTTATTTGTTTCTTATTTATTCCTTTACCTTT TACCTTTTAGATTTTAGTCTGCACAGATAAATCTGCTTTTTCTTAACATT ATTATACCAAACTAATAATTAACAATATTATTTAACTATTATCTCAATTT ATATTTTACTCTTCCATATATTTGTCTTATCTTCTTTTATTATTTAATAT TTTTCATACCATCTATAAACTA	TGTAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXTTTGTTTAACTCTGTACCCATTTTTTAATAG GGTTATTTCGTTTTCTGGAGTCTAATTTCTTGAGTTCTATGTATATATTG AATATTAGCCATCTATCAGATGTAGGATTGGTAAAGATCTTTTCTCAATC TGTTGGTTGCCTTTAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATAT CACTATTTGCAGATGACAGGATCATATACTTAAGCGACCCCAAAAATGCC ACCAGAGAACTCCTAAAGCTGATAAACAACTTCAGCAAAGTGACTGGATA TAAAATTAACTCAAACATATCAGTAGCCTTCCTCTACTCAAAGGATAAAC AGGCCGAGAAAGAAGTTAGGGAAATGACACCCTTCACAATAGTCACAAAT AATATAAAATACCTTGGTGTGACTCTAACCAAGCAAATGAAAGATCTATA TGAGAAGAACTTCAAGTCTCTGAAGAAGATCTCAGAAGATGAAAAGATCT CTCATGCTCATGGATTGGCAGAATTAATATAGTAAAAATGGCCATCGTGC TGAAAGCAATCTACAGATTCAATGCAACCCCCATCAAAATTCCAAATCAA TTCTTCATAGAGTTAGAAAGAACAATTTGCAAAA
quality values	Open. Hide. 7 7 7 9 17 23 29 30 20 17 19 14 12 17 10 9 9 17 17 33 33 47 22 17 13 12 8 7 12 10 10 9 9 9 9 3 0 3 13 16 18 20 24 32 37 41 31 31 31 33 33 33 47 30 18 15 11 11 11 11 11 12 12 12 16 16 24 28 33 33 36 36 36 53 53 53 50 50 50 50 50 50 40 40 42 42 42 47 50 50 68 68 68 47 42 42 41 41 41 57 59 59 59 57 57 57 48 48 48 47 41 46 50 46 46 59 57 57 68 68 57 57 57 48 48 50 50 50 46 48 46 46 46 47 57 57 57 57 57 57 57 48 50 50 50 57 57 57 47 47 47 57 57 57 57 68 68 57 57 57 57 57 57 52 52 57 57 57 57 57 57 57 54 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 38 38 24 13 14 38 38 68 68 68 57 57 57 57 57 57 57 59 68 68 68 59 59 50 54 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 48 48 48 48 48 48 48 59 48 48 48 48 48 48 48 48 48 59 59 48 46 46 46 27 27 13 13 14 14 14 13 15 28 28 47 59 48 48 48 48 48 59 59 57 48 43 34 34 23 23 19 19 25 21 20 23 16 16 11 12 12 30 26 27 24 18 13 14 14 14 11 23 11 14 14 23 23 31 25 25 13 19 10 18 18 13 19 14 14 15 28 25 20 20 15 11 8 8 8 8 10 8 8 8 8 9 19 10 10 10 11 11 11 11 11 11 12 11 11 9 9 9 9 9 9 11 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 9 9 10 11 11 11 10 10 8 8 6 6 8 8 6 6 6 10 10 10 9 9 9 11 9 8 8 8 8 6 8 8 8 8 8 8 8 8 8 12 11 11 8 8 6 6 8 8 10 10 11 11 10 10 8 8 8 8 10 9 10 8 8 8 8 8 10 9 8 8 8 8 8 8 13 10 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 10 10 15 11 10 8 8 6 6 8 8 8 8 8 6 8 8 8 10 8 8 12 8 8 8 8 12 12 12 10 10 10 12 10 12 6 6 8 8 11 8 8 6 6 8 8 8 8 6 6 8 8 8 9 9 9 11 11 18 10 9 9 9 8 8 8 6 7 8 8 8 8 8 8 6 6 8 8 8 8 8 8 10 10 11 11 18 15 8 8 6 6 8 8 10 8 8 6 6 8 8 8 8 8 8 8 8 8 8 10 11 11 10 8 8 8 8 8 8 11 8 8 8 8 8 10 16 8 10 7 6 8 8 9 9 13 10 9 9 8 10 8 10 6 6 6 8 10 12 10 14 12 16 8 8 8 10 10 12 14 12 10 11 13 15 11 12 8 8 8 8 8 8 9 9 9 9 9 9 9 10 8 8 6 6 8 8 8 8 8 8 8 8	Open. Hide. 7 10 6 6 8 11 10 9 9 9 14 17 20 28 28 37 30 28 28 33 33 30 33 23 23 9 11 13 9 9 9 12 11 11 13 12 16 13 16 16 19 29 23 22 11 13 14 30 23 33 27 15 11 12 8 8 7 8 6 13 18 23 20 19 24 32 39 50 50 53 50 53 50 50 50 57 57 43 43 47 50 50 50 50 50 50 50 42 42 42 51 57 68 68 68 68 50 50 54 54 54 54 57 57 57 54 54 54 54 57 57 57 57 57 57 57 57 46 46 50 50 50 51 57 68 68 68 68 68 68 68 50 50 50 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 68 68 68 68 68 68 50 50 50 37 37 37 50 50 50 52 37 37 50 50 50 50 50 50 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 45 45 52 57 57 57 57 52 62 62 62 62 62 62 62 52 52 52 62 62 52 52 52 62 62 62 62 52 52 52 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 52 62 62 62 52 52 62 62 62 62 62 62 62 52 52 52 62 62 62 62 52 52 45 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 44 62 43 34 26 14 13 13 14 15 30 43 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 54 62 62 62 62 62 62 62 62 57 57 57 57 57 57 57 52 52 52 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 43 43 35 32 33 42 43 43 23 23 32 27 43 44 52 57 57 57 57 57 57 52 43 52 52 52 52 52 48 50 50 44 50 50 57 50 50 54 57 57 57 48 48 48 48 57 57 57 57 57 57 59 57 59 59 59 48 48 44 44 44 44 48 57 57 59 57 57 57 57 57 57 57 48 48 48 43 43 37 43 46 57 57 57 59 57 48 48 57 57 48 46 42 42 39 43 43 39 43 39 43 37 40 35 39 39 46 43 48 48 48 34 34 25 24 22 30 30 33 32 32 37 34 30 25 31 30 37 31 34 28 28 22 19 14 14 15 20 26 37 37 41 34 24 32 20 24 24 37 37 46 59 48 48 48 46 46 41 39 39 39 25 18 21 22 23 24 30 30 28 28 28 37 28 33 33 33 33 33 39 34 31 23 20 20 31 32 37 37 33 25 22 22 22 30 28 31 25 28 25 27 27 30 31 31 39 32 33 26 26 11 11 18 18 18 18 13 18 18 26 21 25 33 34 41 37 37 31 30 18 15 10 10 13 12 19 21 11 11 11 19 19 18 11 11 13 17 18 14 14 24 26 29 28 24 24 15 12 10 10 10 12 23 19 28 22 28 20 24 10 10 8 8 8 8 11 11 21 27 37 20 11 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no065_a17.b1 MSMg01no065_a17.b1 CHROMAT_FILE:
MSMg01no065_a17.b1 PHD_FILE: MSMg01no065_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:26 2005
         (300 letters)



>mm_chr4_105283209_105283908
          Length = 700

 Score =  385 bits (199), Expect = e-111
 Identities = 220/227 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttctttctggctgcatctgttagaaaccaggtgctctcccagactgcctc 64
           ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 356 gaattctttggactttctggctgcatctgttagagaccaggtgctctcccagactgcctc 297

                                                                       
Query: 65  agtgccagccgctatgacatcaccagccaccaaactccacaagagtaccctttaaagggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agtgccagccgctatgacatcaccagccaccaaactccacaagagtaccctttaaagggt 237

                                                                       
Query: 125 ccccaccatcatacccattctctgtttcctggtctgtctgtccctcactctgtccctctt 184
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ccccaccatcatgcccactctctgtttcctggtctgtctgtccctcactctgtccctctt 177

                                                          
Query: 185 tgtgtctttgtcttctctctctctctctttctctctctctctctctc 231
           ||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 176 tgtgtctttatcttctctctctctctctctctctctctctctctctc 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information