BAC Information

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BAC

Clone NameMSMg01-065G16
Chromosome4 (Build37)
Map Location 64,659,232 - 64,659,391
singlet/doubletsinglet
Overlap genenone
Upstream geneTnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065G16.T7 (MSMg01no065_g16.b1)MSMg01-065G16.TJ (MSMg01no065_g16.g1)
ACCAG290632AG290633
length766687
length of high quality
(start - end)
---160 (85 - 244)
definitionCHROMAT_FILE: MSMg01no065_g16.b1 PHD_FILE: MSMg01no065_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:55 2005CHROMAT_FILE: MSMg01no065_g16.g1 PHD_FILE: MSMg01no065_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATCTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAT
CCGNCGGAATTCTCACCTGTATGCCTACACGAATGTGTTATGAAGCACCC
TGAATAAATGGTTCTACATCTCTTACTCTATCAGGTAAATGCAAATCATC
AACAACCTCTGATATTCCTACCTCACATCCAGTCATGAATGTTCTAATAT
CAAAAATCTCAGGTGACAGCATGATGCTGTGCGAGGATGTGGTAGAATGA
GGAACACTCNCTCCATTGTTAGGTGGGATTGCTAGGTTTGTACAACCACT
CTCGGAATTCCGTACTGTGCGGGTCCTCTTTAAAATTGTGACATAGTTAC
TACCGGTAGGATCCATGCACTACCTCTTTCTGGGCACTTTATCCACGAAG
ATGCTTCCCTCTGCGNACGAAGTGACACATGGCTCCCCTATTGTTCTTAG
CAGCCTTTATTTATTATATCCTATTACGCTGCACTTGATTTCCCGATGTT
CCCTTTTCACCAGGACATGTTATTTTGAACACTGTTTTACATCTTATTCA
CCGCGAGCATCTACTCATTCTTATTAAATTGAATGTTCTTCTTCGAGTTT
TCGTATCCAATTTGCATGTAATTTGTCAGGGCTTTCTTTCTTGAGTGTAT
TTTTACACACTTCCCATTAGGAATTTTTTTCCCTACTGCAATTTTCTGTA
TAAGAGCGATTTTTAGCTCCCTTTACCTATTCATACCCCAAGATTTTTTT
TTAACCATATCCCCCC
CCGCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTACTAACTAGGGAATACAATGAG
ACAAACCAATGTTCATTATGCCACTTGCTATCTTACGTATGGAGGTCAAT
AGCGCAGAAACACTAACATATTGAGGGTAGATGTTGAGGCTGGACAGATG
CCTAATGGCAGATGTCTTTGTATTAAGTAATTCCACTCACTGGTGTCAAC
ACAAACGAATAACCAGGAAAGTTTACTTATGACCAGCATACTATGTGAAT
TAGAGTGTACCATTTTGGATTTAAGTTGTCTCTCATACTCTTTCTTGTGA
TAGCTACAGTGTTCAAGCACTCTTATTAAAGTAGGATGATGGCTAGATTT
CCCAATATCCTCGTAACCGGATAAGGAATATCAATTCCTATTCGAATTTG
GATTAGGAATCTAAAATTAATCCGCAACCCACTTTTCTTATTCTTTGTTC
ACTTTCTTTCTTCATTTGTTTTTTCCTATGTATTTTCTTTTTTAAACACC
CCACTGTAATACCATTTCTCTGATTTCTACACAGTTATCCTCTCTTACAA
ACTTTTTCACCTCACTCGATTTTGAATGATTTTTTTAATTTATGATGCTA
CAGCCTTGTTATCTCTATTTTGTATTACCTTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_g16.g1 MSMg01no065_g16.g1 CHROMAT_FILE:
MSMg01no065_g16.g1 PHD_FILE: MSMg01no065_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:55 2005
         (160 letters)



>mm_chr4_64659032_64659591
          Length = 560

 Score =  286 bits (148), Expect = 4e-82
 Identities = 157/160 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggaatacaatgagacaaaccaatgttcattatgccacttgctatcttacgtatggag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tagggaatacaatgagacaaaccaatgttcactatgccacttgctatcttacgtatggag 260

                                                                       
Query: 61  gtcaatagcgcagaaacactaacatattgagggtagatgttgaggctggacagatgccta 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaagagcgcagaaacactaacatattgagggtagatgttgaggctggacagatgccta 320

                                                   
Query: 121 atggcagatgtctttgtattaagtaattccactcactggt 160
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 atggcagatgtctttgtattaagtaattctactcactggt 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)