Query= MSMg01no065_i11.b1 MSMg01no065_i11.b1 CHROMAT_FILE:
MSMg01no065_i11.b1 PHD_FILE: MSMg01no065_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:04 2005
(245 letters)
>mm_chr4_94834614_94835259
Length = 646
Score = 460 bits (238), Expect = e-134
Identities = 244/246 (99%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 cattt-aaaaaatgtttcttgttgctggactttgttttgctttgtatttggggtgtgtgc 59
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catttaaaaaaatgtttcttgttgctggactttgttttgctttgtatttggggtgtgtgt 387
Query: 60 tatgtgacccctacaaggagccatatgtggattaaaagtttgacaaataaggactaacag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatgtgacccctacaaggagccatatgtggattaaaagtttgacaaataaggactaacag 327
Query: 120 gaaagggtcatgaagagactgttcaaggtggaagcccacacagactgtgggtggtgggcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaaagggtcatgaagagactgttcaaggtggaagcccacacagactgtgggtggtgggcc 267
Query: 180 tgggatacattgttctaccttaccaagaagctcaacacagccaggccttgagtggtcaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgggatacattgttctaccttaccaagaagctcaacacagccaggccttgagtggtcaaa 207
Query: 240 ggtatg 245
||||||
Sbjct: 206 ggtatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space: 150332
Effective search space used: 150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_i11.g1 MSMg01no065_i11.g1 CHROMAT_FILE:
MSMg01no065_i11.g1 PHD_FILE: MSMg01no065_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:04 2005
(535 letters)
>mm_chr4_94711815_94712748
Length = 934
Score = 1011 bits (523), Expect = 0.0
Identities = 532/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 1 tcaccctagtggcctggcctaggcattgctactccatttctttggtgtatatttgagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaccctagtggcctggcctaggcattgctactccatttctttggtgtatatttgagcat 260
Query: 61 tttgcaagatggttttcagtcaagagatcagatagacactggagaagaaaacaagtgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcaagatggttttcagtcaagagatcagatagacactggagaagaaaacaagtgggg 320
Query: 121 gaacagcaacacaataaagaacctcttggcagcaccttttaggttgaatctgtcaggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagcaacacaataaagaacctcttggcagcaccttttaggttgaatctgtcaggtga 380
Query: 181 ctgatgtagcttgggctaagccatctgcttcccattcctttccagctctagggttccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgatgtagcttgggctaagccatctgcttcccattcctttccagctctagggttccttt 440
Query: 241 aaatggttcagacattctaaccaaaacctttttcttatgtcctttattttcacgtgccat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatggctcagacattctaaccaaaacctttttcttatgtcctttattttcacgtgccat 500
Query: 301 ggcagtataaatatttccaatgttgaccatatcctcgcgcaccttcaaatccctctacag 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ggcagtataaatatttccaatgttgaccatatcctcgcgcatcttcaaatccctctacag 560
Query: 361 ttccccattattcaaaacacagggtggactagagaccactgcataagttgacccccacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccccattattcaaaacacagggtggactagagaccactgcataagttgacccccacct 620
Query: 421 ccttcccacttcatccccttcttttctttgtaccatttgctttccagcctcttcaaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttcccacttcatccccttcttttctttgtaccatttgctttccagcctcttcaaacag 680
Query: 481 atcccatgtccctcccccatcacatggtactttcacatggtgctttttgtgcttt 535
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 atcccatgtccctcccccatcacatggtactttcacatggtgctttt-gtgcttt 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 934
Length adjustment: 10
Effective length of query: 525
Effective length of database: 924
Effective search space: 485100
Effective search space used: 485100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
