ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC
TATCGGATTTAGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGCCTT
TTTGTCATATTTGTCTCACACCAGCTAGAATGCCTAAGATTAAAAATTCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAATGAATACTCC
TCCATTGTTGGTGGAATTGCTAACTTGTACAACCACTCTGGATTTTTCTT
TCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACAA
CTGATGCATCTCTCCCCCATAAGGGACACTATTACCGTCTATGGCCTAAA
GATCTGGTAAAATCCCTAAAGGCTCTTTGGATTCTACAAGAAAGAGGCAT
GGCATATTGGGACTTATTCCTCATGGGAAAGGGTTTTGGTTTTGGTATTA
TAAGCTCTATCCCATATATCTGGGATAATCCCATATGCCGTATGTTAAAC
TGAATGCCTCTGCTTGTTTTGGAGTGTAAGAAATTTTAAAAGGAAATTCC
GCTGGGAAAAAACCTACCCATTTTGGAA

GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAATAGAAACCTCTAAGTTATCAGGAG
TAAAACAGAACTTTAGATTGCTCTCATCTCAAACATGTCTTCACTGTCTG
CCCAAGCAAATATTGACTCTGTTCATAGTGTAAAAGCTAAAACTCAGGTA
TCATTATTATAAGAATTATTCTTCATAATTTTTTTTTGCCTTCAGGTTCA
CTGAAATGTATAATAGCAGAGAGTTAAAAGGCCCAGTCCTGGGCTTTCAG
TCATTGTGGATCTATGACTATCATTCTGCGAGGCCACTTATTTCTTCTTA
TAGTTTCAAATAAAGTCTGTGTGGAGCCCTGTGCCATCTTGGGCACAAAC
TAGGCCGAGGCCCCCAAGGTACCCAGAGGACTCTCCATGCTGCAGACACC
CTAGCACAACCAGGATCTTGAGATCACTGGTGAGTGGAACGTAACATCTG
TTCCAAAAAAACCCAGAAGGTCTTGTGCTAGCAGGAATAGGGACAAAGGA
AACATTCCTGACCATTGACTGTGGTTCCTTCCTCGGCGCCAGCCTCGCAC
CATCTTGGGCACAAACTCAGCAGGCCCTAGTACACCCAGGAACTTGGGAT
CACTGGTGAGTGGAATGCAACATCT

Query= MSMg01no065_m19.g1 MSMg01no065_m19.g1 CHROMAT_FILE:
MSMg01no065_m19.g1 PHD_FILE: MSMg01no065_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:24 2005
         (518 letters)



>mm_chr4_51936109_51937026
          Length = 918

 Score =  919 bits (475), Expect = 0.0
 Identities = 496/503 (98%), Gaps = 1/503 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatagaaacctctaagttatcaggagtaaaacagaactttagattgctctcatctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caaatagaaacctctaagttatcaggagtaaaacagaactttagattgctctcatctcaa 443

                                                                       
Query: 61  acatgtcttcactgtctgcccaagcaaatattgactctgttcatagtgtaaaagctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acatgtcttcactgtctgcccaagcaaatattgactctgttcatagtgtaaaagctaaaa 383

                                                                       
Query: 121 ctcaggtatcattattataagaattattcttcataatttttttttgccttcaggttcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcaggtatcattattataagaattattcttcataatttttttttgccttcaggttcact 323

                                                                       
Query: 181 gaaatgtataatagcagagagttaaaaggcccagtcctgggctttcagtcattgtggatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaaatgtataatagcagagagttaaaaggcccagtcctgggctttcagtcattgtggatc 263

                                                                       
Query: 241 tatgactatcattctgcgaggccacttatttcttcttatagtttcaaataaagtctgtgt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgactattattctgcgaggccacttatttcttcttatagtttcaaataaagtctgtgt 203

                                                                       
Query: 301 ggagccctgtgccatcttgggcacaaactaggccgaggcccccaaggtacccagaggact 360
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 202 ggagccctgtgccatcttgggcacaaactaggccgagggtcccaaggtacccagaggact 143

                                                                       
Query: 361 ctccatgctgcagacaccctagcacaaccaggatcttgagatcactggtgagtggaacgt 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctccatactgcagacaccctagcacaaccaggatcttgagatcactggtgagtggaacgt 83

                                                                       
Query: 421 aacatctgttccaaaaaaacccagaaggtcttgtgctagcaggaatagggacaaaggaaa 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  aacatctgttcc-aaaaaacccagaaggtcttgtgctagcaggaatagggacaaaggaaa 24

                                  
Query: 481 cattcctgaccattgactgtggt 503
           ||| |||||||| ||||||||||
Sbjct: 23  catccctgaccagtgactgtggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)