Query= MSMg01no066_f21.b1 MSMg01no066_f21.b1 CHROMAT_FILE:
MSMg01no066_f21.b1 PHD_FILE: MSMg01no066_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:08 2005
(600 letters)
>mm_chr4_99443822_99444821
Length = 1000
Score = 1102 bits (570), Expect = 0.0
Identities = 582/586 (99%), Gaps = 1/586 (0%)
Strand = Plus / Plus
Query: 16 cctcatagcaaaaag-aatccagaagggctggagaggtggctcagtagtgaagagtaagt 74
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cctcatatcaaaaagtaatccagaagggctggagaggtggctcagtagtgaagagtaagt 274
Query: 75 acttagctcttgcagaggacatgggcttgatttcaagcacccagatgaggctcacaatca 134
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 acttggctcttgcagaggacatgggcttgatttcaagcacccagatgaggctcacaatca 334
Query: 135 cctgtaactccagttccaggggatctaatcccctcttgtgactcccatggacactgatac 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctgtaactccagttccaggggatctaatcccctcttgtgactcccatggacactgatac 394
Query: 195 atgtacacacatcaaatacccatacacagaaaataaacataataataaaaaatgagatgg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atgtacacacatcaaatacccatacacagaaaataaacataataataaaaaatgagatgg 454
Query: 255 agtgtgacagaggaagatacctggtgttgacctctggccttcaaatgaacatacacagtt 314
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agtgtgacagagaaagatacctggtgttgacctctggccttcaaatgaacatacacagtt 514
Query: 315 atgtgcacatatatacactacatgcatgtacaaaaaaaaaaaaaagaaaaaagaaagaaa 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atgtgcacatatatacactacatgcatgtacaaaaaaaaaaaaaagaaaaaagaaagaaa 574
Query: 375 caagccaatacaggaaatgaatgtggaatgaaaaaacaaaacaaaacaatcaaacaaaca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 caagccaatacaggaaatgaatgtggaatgaaaaaacaaaacaaaacaatcaaacaaaca 634
Query: 435 aacaaacaaaaaacaaacaaaacaaaaaaacccataaaaaatccaaacaaaacaaaaggc 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aacaaacaaaaaacaaacaaaacaaaaaaacccataaaaaatccaaacaaaacaaaaggc 694
Query: 495 aagtaaaatgcaagaaattcaaagttcactacatcaaataggaaactccatagactgact 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aagtaaaatgcaagaaattcaaagttcactacatcaaataggaaactccatagactgact 754
Query: 555 caccaatagatagaatagaacaggaggagaactgcatactagggct 600
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 caccaatagatagaatagaacaggaggagaactgcatactagggct 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f21.g1 MSMg01no066_f21.g1 CHROMAT_FILE:
MSMg01no066_f21.g1 PHD_FILE: MSMg01no066_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:08 2005
(466 letters)
>mm_chr4_99608530_99609395
Length = 866
Score = 830 bits (429), Expect = 0.0
Identities = 444/449 (98%)
Strand = Plus / Minus
Query: 18 gctctggaagtccatccacactgccaaatccagtgtcctcagccactgagtgaggatgtt 77
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 863 gctctggaagtccatccacactgccaaatccagtgtcctcagccactgaatgaggatgtt 804
Query: 78 gtcacaacccctggagccactttctctgacatatactcacttgtgtttatagcttgcctt 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtcacaacccctggagccactttctctgacatatactcacttgtgtttatagcttgcctt 744
Query: 138 ttgttgttgttaggagacaacgtcccacttaggaatccatgctggccttgaactcacagg 197
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 743 ttgttgttgttaggagacaacgtcccacttaagaatccatgctggccttgaactcacaga 684
Query: 198 cttcttgtcttagcctccagactgctgagattatgggcatgtgcggctgtgccccatgac 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttcttgtcttagcctccagactgctgagattatgggcatgtgcggctgtgccccatgac 624
Query: 258 atatacttatttatagaaaagaccaactgtatgaaatatcagaagaccaaagtgcaagtt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atatacttatttatagaaaagaccaactgtatgaaatatcagaagaccaaagtgcaagtt 564
Query: 318 ccaacactaccaagaagcaggacaagtgaaccacgtttcacaaccacagttcgtggttta 377
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 563 ccaacactaccaagaagcaggacaagtgaaccacgtttcacgaccacagttcgtggttta 504
Query: 378 agaagtgcacctggcatagccttctccagttctaggctggagagtacagttgccactttt 437
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaagtgcacctggcacagccttctccagttctaggctggagagtacagttgccactttt 444
Query: 438 caaggaaacttctctttggtacagataga 466
|||||||||||||||||||||||||||||
Sbjct: 443 caaggaaacttctctttggtacagataga 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
