Query= MSMg01no066_j18.b1 MSMg01no066_j18.b1 CHROMAT_FILE:
MSMg01no066_j18.b1 PHD_FILE: MSMg01no066_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:27 2005
(527 letters)
>mm_chr4_66074293_66075220
Length = 928
Score = 905 bits (468), Expect = 0.0
Identities = 513/532 (96%), Gaps = 9/532 (1%)
Strand = Plus / Minus
Query: 1 tttatctgttctgcaattaacattgatggtctcagatagaccaagcagctggtgacaaga 60
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tttatctattctgcaattatcattgatggtctcagatagaccaagcagctggtgacaaga 669
Query: 61 atgataggattgttatacttatggaaactgtaatttagcagagaggacaaatattaaata 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atgataggatcattatacttatggaaactgtaatttagcagagaggacaaatattaaata 609
Query: 121 gcatgcctacgaaggactggtgcccatccctaccataaaagaagacactcttaactcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcatgcctacgaaggactggtgcccatccctaccataaaagaagacactcttaactcttg 549
Query: 181 gcacttaactctttttgtacaccccaaacttggaaaggttttaattcatgtaaattgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcacttaactctttttgtacaccccaaacttggaaaggttttaattcatgtaaattgctg 489
Query: 241 tacatctttttt----agcctgcattttctccaatgattcgcatgtaaagcaaggttttt 296
|||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tacatc----ttccaaagcctgcattttctccaatgattcgcatgtaaagcaaggttttt 433
Query: 297 aaatcccaatttatactcttttgagaattctatgagag-aaaaaaaatgtggtgcctgtc 355
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 432 aaatcccaatttatactcttttgagaattctatgagagaaaaaaaaatgtggtgcctgtc 373
Query: 356 taacacatagtaggtaccagtcattgttgtggaaacaatgaccatatgtggatgctctat 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 372 taacacatagtaggtaccagtcaatgttgtggaaacaatgaccatatgtggatgctctat 313
Query: 416 tgtgtttaatatatcacaataaaagtaatgtgctgtgggaaggaaaatggcccagtgaga 475
| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 312 tctgtttaaaatatcacaataaaaataatgtgctgcgggaaggaaaatggcccagtgaga 253
Query: 476 ggagaaccgagtaaagaataatgcttacattcttcatcatcagcatgcattt 527
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggagaaccgagcaaagaataatgcttacattcttcatcatcagcatgcattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_j18.g1 MSMg01no066_j18.g1 CHROMAT_FILE:
MSMg01no066_j18.g1 PHD_FILE: MSMg01no066_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:27 2005
(365 letters)
>mm_chr4_65941999_65942765
Length = 767
Score = 632 bits (327), Expect = 0.0
Identities = 357/367 (97%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 1 tccccattttcc-ccctataatagaggggctgagctcagtaactgctaccagcctgctgg 59
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccccattttccacgctataatagaggggctgagctcagtaactgctaccagcctgctgg 260
Query: 60 atggaaatctctgatcctttgctaggggg-aaaaactggcagcaaggtcatttcttaaag 118
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 atggaaatctctgatcctttgctagggggaaaaaactggcagcaaggtcatttcttaaag 320
Query: 119 attcactctcattatgaaaacacagtcataatctctggagtgagaatcaggtaggcaggg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 cttcactctcattatgaaaacacagtcataatctctggagtgagaatcaggtaggctggg 380
Query: 179 actggattcttatcggctacagcctacaacagtgctgggtactgaacctaaagttaatat 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 actagattcttatcggctacagcctacaacagtgctgggtactgaacctaaagctaatat 440
Query: 239 gatgacttatagcagttaatatttatagtgttcctggctgtatgcatgtttgttcatgtc 298
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 gatgacttatagtagttaatatttatagtgttcctggctgtatgcatgtttgttcaagtc 500
Query: 299 ttcctcctaacattcctctgacttatggataataacaaatgcagatgttcacagtgttga 358
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctcccaacattcctctgacttatggataataacaaatgcagatgttcacagtgttga 560
Query: 359 gagatca 365
|||||||
Sbjct: 561 gagatca 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space: 269848
Effective search space used: 269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
