BAC Information

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BAC

Clone NameMSMg01-066L14
Chromosome4 (Build37)
Map Location 36,890,643 - 36,890,865
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L14.T7 (MSMg01no066_l14.b1)MSMg01-066L14.TJ (MSMg01no066_l14.g1)
ACCAG291629AG291630
length674753
length of high quality
(start - end)
372 (56 - 427)223 (125 - 347)
definitionCHROMAT_FILE: MSMg01no066_l14.b1 PHD_FILE: MSMg01no066_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:37 2005CHROMAT_FILE: MSMg01no066_l14.g1 PHD_FILE: MSMg01no066_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCTCTGAAGAAACAGACTGGGAGGAAGAAGCAGCTCATTATGAG
AAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCC
AAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGC
TTCAAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCC
TGCGCAGAGAGGCAGTGCGCATAGAGGCAGTGCGCAGACTCATTCATTCC
CTTAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAG
CCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGAA
CTTGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGGT
GCAGCTAGACAGGCTCGCCGGCATGTCACTAACTCCTGCCGACTGGCAAA
CGGTTGTACAAGCCGCTCTCCCTAGTATGGCCCTATATATGGAATGGAGA
GCTCTTTGGCATGAATCTGTTCATAGCTCATGTCCGATCAAATGTTTCTG
CTTTGACTCCCGAGCAGATAGATTGGACTTTTTATTTGTTATCGCCTCCT
CGCTCTTTTTTCTGCTCGTCCCAC
CCCCCCCNNNNNCCCCCCNCCCTTCTCCCCNNNCACCNCCCCCTCTTTTN
TTCTCTCTATAATTGCGGCGCTATACGACTCACTATTTCCAGAAATCCGC
GGAATTCATCAAAAATGCCTGGGTAATAAAAATGTGGTTTATGTAAACAA
TGAAATATTATTCACCTGTAAAGAAAAATGAAATTATATTGTTGACAGGT
AAATCACTGAAGCTAGAAATAATCTATTCTGATGCTAGTTATGAATTTGC
AGATATGTGGATTTATTTTGGCACACACATAGGAGAAAGGGAACTATCAA
GTGACCATGAGGAAGGAATTCTAAAGTGAGGCAAATAATCTAGGTGGTAT
GAAGAAGGCAAGAGGATAATGGTTCAGTGAGGGCAAAATGGCGTGTAGAG
TTCAGGGAGAAGAGAGTACGGCAAGATATAGTTAACACTAAAGACTTTGG
TAGATGACATTCTGAAACCTACTACTAAGATACATATTATATAAATGAGA
TTGAATTGGAGTTACTTTATTTACGGGAGACAATGCCTCCCCTCTATATC
TCAGATTTTCACATGAGCCATTACCAGATGTTATTTATTTTTGTACGTAT
GGTCCTACATATCTTCTTCAACATTACATGCTTCTTGCTTTTGGTTATTT
CCAGAAACTTGATGTTAATAACATCATTCTTGAATATTTCTAAGTCCCTT
TGCAATCAGAACATTTACTAACTATAACTGAAACTGACCAGTTATATTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l14.g1 MSMg01no066_l14.g1 CHROMAT_FILE:
MSMg01no066_l14.g1 PHD_FILE: MSMg01no066_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:37 2005
         (223 letters)



>mm_chr4_36890443_36891065
          Length = 623

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaaatgtggtttatgtaaacaatgaaatattattcacctgtaaagaaaaatgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaaatgtggtttatgtaaacaatgaaatattattcacctgtaaagaaaaatgaaat 260

                                                                       
Query: 61  tatattgttgacaggtaaatcactgaagctagaaataatctattctgatgctagttatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattgttgacaggtaaatcactgaagctagaaataatctattctgatgctagttatga 320

                                                                       
Query: 121 atttgcagatatgtggatttattttggcacacacataggagaaagggaactatcaagtga 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 atttgcagatatgtagatttattttggcacacacataggagaaagggaactagcaagtga 380

                                                      
Query: 181 ccatgaggaaggaattctaaagtgaggcaaataatctaggtgg 223
           |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ccatgaggaaggaattctaaagggaggcaaataatctaggtgg 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)