BAC Information

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BAC

Clone NameMSMg01-066N24
Chromosome4 (Build37)
Map Location 64,491,645 - 64,491,888
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066N24.T7 (MSMg01no066_n24.b1)MSMg01-066N24.TJ (MSMg01no066_n24.g1)
ACCAG291745AG291746
length671676
length of high quality
(start - end)
244 (52 - 295)276 (25 - 300)
definitionCHROMAT_FILE: MSMg01no066_n24.b1 PHD_FILE: MSMg01no066_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:49 2005CHROMAT_FILE: MSMg01no066_n24.g1 PHD_FILE: MSMg01no066_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAGAATTTTCTTAGTTGGAGAACTATAGAAGGACCTGCCCCNTACCAGA
ATCTGGGAATGTAGGTCAGGATATTTCTTATGCTGCTATTAACTGTACCC
CAAATTGCTCATAGGTTTCCAGAGAGGGCAACAGAACTTGAAACACCAAA
CACTTTCACACAATAAATCAGAAATTGGTTAGTGCTAAAGTCCACCTTTA
CACTGGCTGGCACCATAATTGGCAATGGTCAACAGCTTGGATTTGATTTA
ATTTGAAAGATAATCTAAAGGGAATTCTATAAAGGAACTATCAAATAACT
GATTTGTGGCGAGCGAGAGGACTTTGAGTTAGTGTGTATCTTTCTACCCC
CTGTCTGAATATGAGCCTGCAGCCTATCTAGACCTGAGTTGAAAAAACAA
AACAAAACAAAAAAACAAAAACAGTGAGCCAAATCCTTGAGGATGGATCC
ACAATGACCCATAAACCCACCAAAGTCAGTCTGGCAATGCAGTTGTGAGC
TGAGATGATTTGAACCATCCTGTCCACTCCATATCTTTACATTCAAAACC
AATAGGTTCCAAATCGAACCAAACAAACTGACAATCTGAATCATTTTATA
AATTGCACATTGCAACACCCCTTNCCTTTTATTTTCTTATGAGTTCTACA
CAAAGTCCCCGATTGAGGAGA
AACTACCTATAGTTTCAGGATCCGCGGAATTCTTTGTTCAGTTCTCGAGC
CCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGT
TCTTTATATATGTTGGATATTAGTCTCCTATCTGATTTAGGATAGGTAAA
GATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTT
TTGCCTTGCAGAAACTTTGGAGATAAGATACAATTTCCTAAACACATGAA
ACTCTAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAA
GTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCT
GAGATAAAAGGATGGACCATGTAGACACTACCATATCCGGGGATCCATCC
CATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGATTAT
GCTGAAAGGACCCTGATATAGCTGTCTCTTCTCATAGTATGCCTGGGCCT
AGCATCCATATAAGTGGATGCTCACAGTCGGCTATTGCATGGATCACATG
GCCCCCACTGAAGGAGCTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTG
CAACCCTATAGGTGGATCACTATTATGAACTAACCAGTACCCCGGAGCTC
TTGACTCTAGCTGCTTATGAATCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_n24.b1 MSMg01no066_n24.b1 CHROMAT_FILE:
MSMg01no066_n24.b1 PHD_FILE: MSMg01no066_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:49 2005
         (244 letters)



>mm_chr4_64491445_64492088
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggaatgtaggtcaggatatttcttatgctgctattaactgtaccccaaattgctca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tctgggaatgtaggtcaggatatttcttatgctgctattaactgtaacccaaattgctca 260

                                                                       
Query: 61  taggtttccagagagggcaacagaacttgaaacaccaaacactttcacacaataaatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtttccagagagggcaacagaacttgaaacaccaaacactttcacacaataaatcag 320

                                                                       
Query: 121 aaattggttagtgctaaagtccacctttacactggctggcaccataattggcaatggtca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaactggttagtgctaaagtccacctttacactggctggcaccataattggcaatgggca 380

                                                                       
Query: 181 acagcttggatttgatttaatttgaaagataatctaaagggaattctataaaggaactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcttggatttgatttaatttgaaagataatctaaagggaattctataaaggaactat 440

               
Query: 241 caaa 244
           ||||
Sbjct: 441 caaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)