BAC Information

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BAC

Clone NameMSMg01-066P04
Chromosome4 (Build37)
Map Location 104,871,809 - 104,872,020
singlet/doubletsinglet
Overlap genePpap2b
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513
Downstream geneLOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066P04.T7 (MSMg01no066_p04.b1)MSMg01-066P04.TJ (MSMg01no066_p04.g1)
ACCAG291801AG291802
length867740
length of high quality
(start - end)
125 (141 - 265)221 (131 - 351)
definitionCHROMAT_FILE: MSMg01no066_p04.b1 PHD_FILE: MSMg01no066_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:55 2005CHROMAT_FILE: MSMg01no066_p04.g1 PHD_FILE: MSMg01no066_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTCCTTTTTTTTTCCNTTCCTCTCCCTTCTCCTCTCCTTCCCCCTT
TCCTCCATTTTNNTACCATGCTATGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCGTGGGC
ACAAGCCTTTGACTTAAAGACAGTTTAGGTTTAGAATAAAAGAAAAAAAT
GGGAGAGAAGATAAAGAAGTGAGGGAGGAAGAGAGGGAGAGAGAGGAGGA
GGAAAGAAAGGATGCAAGTTCTTTCTCTCCTCTTCTCATCCTCATCTCGT
CCTCTTCGTCTCCCTTTTATTTCTTATTCTTTCTCTTCCGCTCTTTCTTT
TCCTTTTCCTCAATGTTTGTGTTATACAATACATAAATGGTTTTTTTTTT
TTTTCTCCCGCTTACATCTTTTTCGCTTCTCGTTCTTCTTTTCTACGTTT
TTCCTTTTTTGTTCTTCCTCTTTTTCTGCGGTTGGGTTCTCGTGTTTTTT
GTGTTTCCTCCCCCCTCGTCCCCTATGCTCTCTTTATTATTATCTTCTGT
TCCCCTCGCTACCTTGTTCGTCCCCCTCCTCTTCCTTTGTCTCTTCTTAC
TACTTTCCTTTTGTCCTTTTTTAGCTTTTTTGCTCTCTCACCGTTTTTCG
CTCCTGTTCTTTCGTGTTCGCTTCTTCGGTCGTCCTTTCCCCCTTTCCCC
CTTTTTCCCCCCCCTCGTTTCTTCTTTTTGTTCTTGTTTCCTCTTCCCAT
TATTTTATCCCATTCTATTTTCCATGCGCCGCCCCTTGTGTCCGGCCTTT
CTCTTCGAATGTTTTTTTTTTTATTTCCTTCCTTCCTTTTCTTTTTCTTC
CTCCCTCCTCCCCCCCC
CCCCCCCCCNNCCCCNCNCCCNCTCCCCCCNNNCCCCCNNNNNNNNCCTT
CTGNCGCCTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
ACCGCGGAATTCCTTCCAGGTCCCCACAGAAACAGTCGCTACCCTGCCTT
GAAAAGGCTTAATGACTCTAGCAGAAGCCAGGGTAGGAGCAACCAGAAAA
ACCCCATGTCCTATCTAGCTTTCTCTCCTTCAGCTGCGCCTTGCACTGCC
CAATCAAGTATAACATGGGGTAAGGGTCTTAATACGGCCTCAGAATGCTC
ATTGTTCTGTTCAATAATCATAGGCTCGGTGCTTGCCAAGCCCGCACCCC
AAAATGGGTTCACATAGATTGTTCTTACCTAGGAATCGACGCATGGGAAT
GTCATATGTCATCCTCCCTTCCCTACAGGCCTTAAGCAAGCTACTTCCCC
TGGGAGACCCAGTTGTGCTATAGCATTCGTCCCAAAGAAACTCTGACTTT
GGCACCGCACCATTCTGGCTGTACTAGTGATATAGCCAGTCTTTAACTCT
CTGGGCTTATTTTGGCCCTTACATCAAGTGCTCTTCTTCGCGTGTTCTTT
GTGATCTTCGCCTATCTTCCCATACTCACATTTTTTATTAAAGATTTACC
CAAACTATTAAATGGAAGTACACTGTATGTCGTTTTTCCACTACTCCGAA
ATATGGTAATCTTATCCTTTTCACAGATGTTAGATGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_p04.g1 MSMg01no066_p04.g1 CHROMAT_FILE:
MSMg01no066_p04.g1 PHD_FILE: MSMg01no066_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:55 2005
         (221 letters)



>mm_chr4_104871609_104872228
          Length = 620

 Score =  389 bits (201), Expect = e-113
 Identities = 210/213 (98%), Gaps = 1/213 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagtcgctaccctgccttgaaaaggcttaatgactctagcagaagccagggtaggagc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagtcgctaccctgccttaaaaaggcttaatgactctagcagaagccagggtaggagc 260

                                                                       
Query: 61  aaccagaaaaaccccatgtcctatctagctttctctccttcagctgcgccttgcactgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccagaaaaaccccatgtcctatctagctttctctccttcagctgcgccttgcactgcc 320

                                                                       
Query: 121 caatcaagtataacatggggtaagggtcttaatacggcctcagaatgctcattgttctgt 180
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 caatcaagtataacatgggg-aagggtcttaatacggcctcagaatgttcattgttctgt 379

                                            
Query: 181 tcaataatcataggctcggtgcttgccaagccc 213
           |||||||||||||||||||||||||||||||||
Sbjct: 380 tcaataatcataggctcggtgcttgccaagccc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 620
Length adjustment: 9
Effective length of query: 212
Effective length of database: 611
Effective search space:   129532
Effective search space used:   129532
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)