BAC Information

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BAC

Clone NameMSMg01-067B07
Chromosome4 (Build37)
Map Location 136,158,919 - 136,305,169
singlet/doubletdoublet
Overlap geneLOC433770, 4930549C01Rik, BC029684, Ephb2
Upstream gene1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080
Downstream geneC1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067B07.T7 (MSMg01no067_b07.b1)MSMg01-067B07.TJ (MSMg01no067_b07.g1)
ACCAG291903AG291904
length695711
length of high quality
(start - end)
330 (47 - 376)258 (76 - 333)
definitionCHROMAT_FILE: MSMg01no067_b07.b1 PHD_FILE: MSMg01no067_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:05 2005CHROMAT_FILE: MSMg01no067_b07.g1 PHD_FILE: MSMg01no067_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,304,844 - 136,305,169)(136,158,919 - 136,159,176)
sequence
NAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCTGGGGTATCACATCTGGGGTCTTACAAGGCCTTGGCTCTGCA
GGCAGGCTGTTGACTGCCAGGCTCTCATCCGACCCTCTTCTACTTTGGAA
CCTAGTGATCCCCAGAGCTGGAGACACTGAGGCTTGTGTTCAAACAACCT
CGCATGAGCTTCTGCAGAGAAATAGGAAGCTCAGAGCTTAGGGCCCAGGC
CTGGGATCCATCTGCCTTTCGTCAGCTCTGAGACCATTTCCTGCAGCCTG
GGTTGTTTCCCATGGTGCTTCTGCGGAGCCTTTCAAGTCCCCTGGCACCT
CCAGACCCTCTTTTTTTGACCCCCCCGCCCCCAGCCTAACCGGCTTCACT
CCATGTCCCAGGAAGAGTTGCAAAAGATTCATTGTCTGCATTCGGGCCAC
AAGGATGGACCCTTGGCTTACCTGCTTCCAGGCCCCGGCTGGCCTGTAGG
TTTTGCTCCACATCTCTGATAGAGACAGTCAAGTGTTCATTACGCTGGCA
TGCTGAGGCGCTGAGGTGTCTATTATCAGACGAGCTTCTCCTAAAATGAT
TCCCCCCATCCCCACCCCTAGGAGTCATTTCTCATGTAACCGTGTGTCTT
TCTTTGTCTCCTCGCACAATATGCTGTGTTAACCTTACCAACATA
NCTCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCGGCTTTCAGAGGGCTTACTACCTA
ATTGAGACAGGGGAACACTCTGAAGTACAACTTAATTAATGATCACTTAA
TTATCCTGTGCTCTGTAACTCAACCTTTAGAGCACTGGCCCAGAATGTAT
ATGGCCCCGAGTTATCCCTAGAGCTAGGGAAACTAGCTTCATAATGGCCC
TGCTTGGACTGTGGGGAAATAAAGAGTGCACGAATTTCCACGGTAATAAA
ATAGAGAGAAATGAGGAATTTCTGGTTTGAGTCAAAGTGGACTCGCTCTT
GCCTCCATTTCTTGTTTATCCCCCCCCCCGAGGCTGCACATGCTCGCCAC
CATGCCTCCTCCTTCATGCCTCTCATATCAAGTTGCATATTCTTTCGTCG
TTCTAGGTCAGTTCTTTCTTTTCTTTTTTTCTTTCCTGTATATGTGTTTG
TCTGCCCCCCCTTTTTTTCCTCTTCCTCCTCTTCTGCTTCCCCCCTTTTT
TCCGCCCCTTCCCCTTTTTCCTTCACTACTCCTCTTTTCCCCCTCCCATT
TTCCCCCATCCTTTTATTACCTCTTTATCCCCCCCTCTTACTTCCTTTTC
CCTTTCCCCTTTTTTCCCCCCTTTCCTTTTTTTTTCTTTTTCCCCTTTTT
TTCTCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_b07.b1 MSMg01no067_b07.b1 CHROMAT_FILE:
MSMg01no067_b07.b1 PHD_FILE: MSMg01no067_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:05 2005
         (330 letters)



>mm_chr4_136304641_136305370
          Length = 730

 Score =  584 bits (302), Expect = e-171
 Identities = 320/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctggggtatcacatctggggtcttacaaggccttggctctgcaggcaggctg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggaattccctggggaatcacatctggggtcttacaaggccttggctctgcaggcaggctg 470

                                                                       
Query: 64  ttgactgccaggctctcatccgaccctcttctactttggaacctagtgatccccagagct 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttgactgccaggctatcatccgaccctcttctactttggaacctagtgatccccagagct 410

                                                                       
Query: 124 ggagacactgaggcttgtgttcaaacaacctcgcatgagcttctgcagagaaataggaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggagacactgaggcttgtgttcaaacaacctcgcatgagcttctgcagagaaataggaag 350

                                                                       
Query: 184 ctcagagcttagggcccaggcctgggatccatctgcctttcgtcagctctgagaccattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctcagagcttagggcccaggcctgggatccatctgcctttcgtcagctctgagaccattt 290

                                                                       
Query: 244 cctgcagcctgggttgtttcccatggtgcttctgcggagcctttcaagtcccctggcacc 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 289 cctgcagcctgggttgtttcccatggtgcttctgcggggcctttcaagtcccctggcacc 230

                                     
Query: 304 tccagaccctctttttttgacccccc 329
           ||||||||| |||  |||||||||||
Sbjct: 229 tccagacccacttcctttgacccccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no067_b07.g1 MSMg01no067_b07.g1 CHROMAT_FILE:
MSMg01no067_b07.g1 PHD_FILE: MSMg01no067_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:05 2005
         (258 letters)



>mm_chr4_136158719_136159376
          Length = 658

 Score =  499 bits (258), Expect = e-146
 Identities = 258/258 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggctttcagagggcttactacctaattgagacaggggaacactctgaagtacaacttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggctttcagagggcttactacctaattgagacaggggaacactctgaagtacaacttaa 260

                                                                       
Query: 61  ttaatgatcacttaattatcctgtgctctgtaactcaacctttagagcactggcccagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatgatcacttaattatcctgtgctctgtaactcaacctttagagcactggcccagaa 320

                                                                       
Query: 121 tgtatatggccccgagttatccctagagctagggaaactagcttcataatggccctgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatatggccccgagttatccctagagctagggaaactagcttcataatggccctgctt 380

                                                                       
Query: 181 ggactgtggggaaataaagagtgcacgaatttccacggtaataaaatagagagaaatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactgtggggaaataaagagtgcacgaatttccacggtaataaaatagagagaaatgag 440

                             
Query: 241 gaatttctggtttgagtc 258
           ||||||||||||||||||
Sbjct: 441 gaatttctggtttgagtc 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)