Query= MSMg01no067_c04.b1 MSMg01no067_c04.b1 CHROMAT_FILE:
MSMg01no067_c04.b1 PHD_FILE: MSMg01no067_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:09 2005
(313 letters)
>mm_chr4_126446375_126447085
Length = 711
Score = 563 bits (291), Expect = e-165
Identities = 304/309 (98%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 4 ggaattccttagttcactcagtttttaagttactcacccatcccatgggtgttattgggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattccttagttcactcagtttttaagttactcacccatcccatgggtgttattgcgg 263
Query: 64 caggctctgctctgagacagccctccaagaagttctgacttagtcttccttgcctttgct 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caggctctgctttgagacagccctccaagaagttctgacttagtcttccttgcctttgct 323
Query: 124 gtttcttgattggtcaggctttctttgctctctctcttcctttctctgtcctcttctgaa 183
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 324 gtttcttgattggtcaggctttctttg--ctctctcttccattctctgtcctcttctgaa 381
Query: 184 tccagtgaggtttggcttctatacacatcttgagtttcgataaggtgatggtgaccttcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccagtgaggtttggcttctatacacatcttgagtttcgataaggtgatggtgaccttcc 441
Query: 244 tacttggagaccttcatagatcctctttcctgagatctgcattaaggctatgagatggct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tacttggagaccttcatagatcctctttcctgagatctgcattaaggctatgagatggct 501
Query: 304 cagtggcta 312
|||||||||
Sbjct: 502 cagtggcta 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 711
Length adjustment: 9
Effective length of query: 304
Effective length of database: 702
Effective search space: 213408
Effective search space used: 213408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_c04.g1 MSMg01no067_c04.g1 CHROMAT_FILE:
MSMg01no067_c04.g1 PHD_FILE: MSMg01no067_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:09 2005
(328 letters)
>mm_chr4_126588853_126589582
Length = 730
Score = 603 bits (312), Expect = e-177
Identities = 325/330 (98%), Gaps = 2/330 (0%)
Strand = Plus / Minus
Query: 1 cattcctggaagccacaagttgtcgtctgacatgcagacatacagacatacaagataaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cattcctggaagccacaagttgtcgtctgacatgcagacatacagacatacaagataaat 343
Query: 61 aaacatgaaagagaaaaaaagatagaaagaaca--acacccccccccactgcaatacaca 118
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 342 aaacatgaaagagaaaaaaagacagaaagaacaacacacccccccccactgcaatacaca 283
Query: 119 ccacaaatgtatacgtgtacactcacaaatttaaacagctgtacacacgtacaccaacaa 178
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 282 ccacaaatgtatacgtgtacactcacaaatttaaacagctgtacacatgtacaccaacaa 223
Query: 179 atttaagttgcaatctctcctgggggctggagaggtttagtggttgagagcattgattag 238
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 222 atttaagttgcaatctctcctgggggctggagagatttagtggttgagagcattgattag 163
Query: 239 tctttcagaggacccttgtggtagcttatagccatctaactccacttccaggtgattcaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tctttcagaggacccttgtggtagcttatagccatctaactccacttccaggtgattcaa 103
Query: 299 ctccttcttctgttccttgactgcaccaga 328
||||||||||||||||||||||||||||||
Sbjct: 102 ctccttcttctgttccttgactgcaccaga 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 730
Length adjustment: 9
Effective length of query: 319
Effective length of database: 721
Effective search space: 229999
Effective search space used: 229999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
